Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0797
         (813 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   9e-10
SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)         31   1.1  
SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2)                       29   4.5  
SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)                       29   5.9  
SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)                 29   5.9  

>SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 27/56 (48%), Positives = 36/56 (64%)
 Frame = +2

Query: 542 QRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 709
           ++ V KG    + +K+R SV F RPKT    R+PKYPR S P+ N++D Y IIK P
Sbjct: 143 KKAVQKGVRAAKTKKVRTSVKFHRPKTLSLRRNPKYPRTSAPRINKLDHYAIIKHP 198



 Score = 33.5 bits (73), Expect = 0.21
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +1

Query: 721 KAAMKKIEDNNTLVLLFTQVQTSTIFKAAVK 813
           ++AMKKIEDNNTLV +          KAAVK
Sbjct: 202 ESAMKKIEDNNTLVFIVDVRANKPQIKAAVK 232


>SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)
          Length = 71

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +1

Query: 730 MKKIEDNNTLVLLFTQVQTSTIFKAAVK 813
           MKKIEDNNTLV +          KAAVK
Sbjct: 1   MKKIEDNNTLVFIVDVRANKPQIKAAVK 28


>SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2)
          Length = 114

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 572 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAY 691
           K+ RK +     R+PK  + PR PK P+K   ++N+   +
Sbjct: 68  KKPRKPKKPKKPRKPKKPKKPRKPKKPKKGKWRKNKQGGH 107


>SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)
          Length = 149

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 602 HFRRPKTFEPPRHPKYPRKSLPKRN 676
           H   P+ F PP+H   PRK  P +N
Sbjct: 66  HRALPRKFWPPKHRALPRKFWPSKN 90


>SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)
          Length = 599

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +2

Query: 548 KVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRK----SLPKRNRMDA 688
           K+VKGE  K+ ++     H +  K       PK PRK    S P+R   DA
Sbjct: 537 KLVKGEKSKKQKRGEREDHGKTSKDNRKSTSPKEPRKTQNESKPQRESPDA 587


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,830,682
Number of Sequences: 59808
Number of extensions: 247919
Number of successful extensions: 782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)