Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0797
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    63   2e-10
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    60   2e-09
Z70782-8|CAA94845.2|  536|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   5.2  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 27/56 (48%), Positives = 39/56 (69%)
 Frame = +2

Query: 542 QRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 709
           ++KVVKG+     R++R SVHFRRP T +  R  ++PRKS PK ++MD + II+ P
Sbjct: 16  KKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQHP 71


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 26/56 (46%), Positives = 37/56 (66%)
 Frame = +2

Query: 542 QRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 709
           ++ VVKG      + +R SVHFRRPKT    R P+Y RKS P R+++D++ +IK P
Sbjct: 15  KKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVIKAP 70



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 721 KAAMKKIEDNNTLVLLFTQVQTSTIFKAAV 810
           +++MKKIED+NTLV +  +       K AV
Sbjct: 74  ESSMKKIEDHNTLVFIVDEKANKHHIKRAV 103


>Z70782-8|CAA94845.2|  536|Caenorhabditis elegans Hypothetical
           protein R04B5.9 protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 604 MHRVANFPYSLPMFTFYNLPLSLKCFSNRFHYFFCPLIPVFLGF 473
           +H +      L +  +YNL + + CF   F++   P   +F GF
Sbjct: 477 VHELLTEGRDLSIIKYYNLDIIVPCFFVAFYFIIFPFFKLFGGF 520


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 580  YSLPMFTFYNLPLSLKCFSNRFHYFF 503
            +S  +  FYNL L  KCFS  FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,946,230
Number of Sequences: 27780
Number of extensions: 190812
Number of successful extensions: 665
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)