Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0796
(983 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 90 5e-19
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 58 3e-09
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 56 8e-09
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 55 2e-08
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 46 6e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 46 8e-06
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 46 8e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 46 8e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 44 3e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 43 8e-05
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 42 1e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 42 1e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 41 3e-04
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 38 0.002
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 37 0.005
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 36 0.009
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 35 0.015
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 35 0.020
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 35 0.020
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 33 0.047
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 32 0.11
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 0.76
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 27 4.1
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 7.1
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 89.8 bits (213), Expect = 5e-19
Identities = 43/89 (48%), Positives = 64/89 (71%)
Frame = +1
Query: 256 LADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMA 435
L++PP+NMI QSQSGTGKTAAF L MLSRVD++ PQ +CL+P+ ELA Q +V +M
Sbjct: 149 LSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMG 208
Query: 436 KFCPEIKLKYAVRGEELPRGSKITVTFLL 522
K+ E+K + ++ + +P+G+KI ++
Sbjct: 209 KY-TEVKTAFGIK-DSVPKGAKIDAQIVI 235
Score = 70.9 bits (166), Expect = 3e-13
Identities = 39/87 (44%), Positives = 53/87 (60%)
Frame = +3
Query: 489 QGFKNHSHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL 668
+G K + I+IGTPG + D +K D IKVFVLDEAD M+++QG DQ +RI L
Sbjct: 225 KGAKIDAQIVIGTPGTVMDL-MKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLL 283
Query: 669 PSTCQMMFFSATYGTAVMQFAEIIVSN 749
P Q++ FSAT+ V ++AE N
Sbjct: 284 PRNTQIVLFSATFSERVEKYAERFAPN 310
Score = 70.1 bits (164), Expect = 4e-13
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +2
Query: 92 ESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
E ++ + + DPNSPL+SVK+FE L LKP LLKG+Y+M F PSKIQE ALP
Sbjct: 94 EVRVKLADLQADPNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALP 146
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 57.6 bits (133), Expect = 3e-09
Identities = 28/64 (43%), Positives = 44/64 (68%)
Frame = +1
Query: 247 SYTLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAA 426
S +A ++++A++++GTGKTAAFV+ L +VD+ K+ Q L L PT ELA+QT +V
Sbjct: 74 SIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCK 133
Query: 427 KMAK 438
+ K
Sbjct: 134 TLGK 137
Score = 43.6 bits (98), Expect = 4e-05
Identities = 24/81 (29%), Positives = 43/81 (53%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
HI++GTPG++ D K G+ D + FV+DEAD +++ + ++ P Q+
Sbjct: 164 HIVVGTPGRVLDLAGK-GVADFSECTTFVMDEADKLLSPE-FTPIIEQLLSYFPKNRQIS 221
Query: 690 FFSATYGTAVMQFAEIIVSNP 752
+SAT+ V F + ++ P
Sbjct: 222 LYSATFPLIVKNFMDKHLNKP 242
Score = 35.5 bits (78), Expect = 0.012
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 158 FEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
FE +LK LL G++ GF PS IQE ++P
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIP 76
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 56.0 bits (129), Expect = 8e-09
Identities = 31/117 (26%), Positives = 62/117 (52%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
H+++GTPG++ D ++ +++FVLDEAD M++R G +DQ I + LP T Q++
Sbjct: 139 HVVVGTPGRVHDM-IQRRALPTDAVQMFVLDEADEMLSR-GFKDQIYDIFQLLPPTAQVV 196
Query: 690 FFSATYGTAVMQFAEIIVSNPL*SAFERRRITGIT*NHIM*SAKVQKTNFRAICNIY 860
SAT V++ + +P+ ++ +T + + ++ +C++Y
Sbjct: 197 LLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLY 253
Score = 50.4 bits (115), Expect = 4e-07
Identities = 23/54 (42%), Positives = 38/54 (70%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKM 432
++++AQ+QSGTGKTA F +++L ++D++ Q L L+PT ELA Q +V +
Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVAL 110
Score = 43.6 bits (98), Expect = 4e-05
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +2
Query: 149 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETAL 247
+ TF+ ++LKP LL+G+YA GF PS IQ+ A+
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAI 50
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 54.8 bits (126), Expect = 2e-08
Identities = 31/117 (26%), Positives = 61/117 (52%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
H++ GTPG++ D ++ +K+ +LDEAD ++N QG ++Q I++ LP Q++
Sbjct: 141 HVVSGTPGRVTDM-IRRRNLRTRNVKMLILDEADELLN-QGFKEQIYDIYRYLPPGTQVV 198
Query: 690 FFSATYGTAVMQFAEIIVSNPL*SAFERRRITGIT*NHIM*SAKVQKTNFRAICNIY 860
SAT V++ +NP+ +R +T + + ++ F +C++Y
Sbjct: 199 VVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 255
Score = 51.2 bits (117), Expect = 2e-07
Identities = 25/50 (50%), Positives = 34/50 (68%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEV 420
+++IAQ+QSGTGKTA F + +L +D + Q L LSPT ELA+Q V
Sbjct: 59 RDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNV 108
Score = 39.9 bits (89), Expect = 5e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +2
Query: 146 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETAL 247
+V +FE ++LK +LL+G+YA G+ PS +Q A+
Sbjct: 19 AVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAI 52
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 46.4 bits (105), Expect = 6e-06
Identities = 22/61 (36%), Positives = 37/61 (60%)
Frame = +1
Query: 274 NMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEI 453
+++ Q++SG GKTA FVL+ L +++ VL L T ELA Q A+ +K+ P++
Sbjct: 90 DVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDV 149
Query: 454 K 456
+
Sbjct: 150 R 150
Score = 45.2 bits (102), Expect = 1e-05
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Frame = +3
Query: 489 QGFKNHS---HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIH 659
+ FK+ S HI++ TPG++ + V+ + + +K FVLDE D ++ + +
Sbjct: 165 EAFKDKSKSPHIVVATPGRL-NALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVF 223
Query: 660 KCLPSTCQMMFFSATYGTAVMQFAEIIVSNPL 755
+ P Q+M FSAT + + + NPL
Sbjct: 224 RATPPQKQVMMFSATLSNEIRPICKKFMQNPL 255
Score = 30.7 bits (66), Expect = 0.33
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 158 FEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
F LKP LL+ + GF PS++Q+ +P
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIP 83
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 46.0 bits (104), Expect = 8e-06
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Frame = +1
Query: 232 SRNSTSYTLADPPQNMIAQSQSGTGKTAAFVLAML------SRVDSNKNYPQVLCLSPTY 393
S S + LA ++++AQ+++G+GKTAA+++ +L ++D N+ L L PT
Sbjct: 39 SVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTR 98
Query: 394 ELAIQTGEVAAKMAKFCPE-IK-LKYAVRGEELPRGSKI--TVTFLLVLQERCLIGVSSL 561
ELA Q V K+ FC + I+ + A + + + ++ RC++ V+S
Sbjct: 99 ELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVAS- 157
Query: 562 ACLIWVKLKFL 594
L KLKFL
Sbjct: 158 GVLPLDKLKFL 168
Score = 42.3 bits (95), Expect = 1e-04
Identities = 25/92 (27%), Positives = 45/92 (48%)
Frame = +3
Query: 513 ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMF 692
I+I TP + V G+ + K+K V+DEAD+M++ G+ + + + LP Q
Sbjct: 143 IVIATPSRCVVH-VASGVLPLDKLKFLVIDEADLMLS-FGYNEDMKTLSRSLPRGTQSFL 200
Query: 693 FSATYGTAVMQFAEIIVSNPL*SAFERRRITG 788
SAT + +++ NP A + + +G
Sbjct: 201 MSATLSKNIASLQKLVCRNPFILAVKDKEASG 232
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 46.0 bits (104), Expect = 8e-06
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Frame = +3
Query: 435 KILS*NKVKVCS*RGRTS-----QGFKNHSHILIGTPGKMFDWGVKFGMFDMGKIKVFVL 599
KI S + VC G S Q + I+I TPG+ D F + I++ V+
Sbjct: 352 KIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVM 411
Query: 600 DEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPL*SAFERRR 779
DEAD M+ G D+ I + P + Q M FSAT V + ++ P+ + ++
Sbjct: 412 DEADRML-EDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKK 470
Query: 780 IT 785
T
Sbjct: 471 TT 472
Score = 43.6 bits (98), Expect = 4e-05
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSR-VDSNKNYP--QVLCLSPTYELAIQTGEVAAKMAKF 441
++++ + +G+GKTAAF++ +L R + K P +VL L PT ELA+Q VA K+A F
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASF 356
Score = 31.9 bits (69), Expect = 0.14
Identities = 11/32 (34%), Positives = 23/32 (71%)
Frame = +2
Query: 155 TFEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
+F++++L +LKG+ +GF P++IQ+ +P
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIP 291
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 46.0 bits (104), Expect = 8e-06
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Frame = +3
Query: 474 RGRTSQGFKNHSHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQD-QCI 650
+ ++ KN S ++IGTPG++ D + G D ++ VLDEAD M++ QD + I
Sbjct: 276 KSEQARAAKNAS-VIIGTPGRLLDL-INDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNI 333
Query: 651 RIHKCLPS---TCQMMFFSATYGTAVMQFAEIIVSNPL 755
H P+ + Q +FFSAT+ +V A + +P+
Sbjct: 334 ISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPV 371
Score = 44.8 bits (101), Expect = 2e-05
Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAF---VLAMLSRVDSNKNYPQVLCLSPTYELAIQTGE 417
++++ +++G+GKT AF L L+ + NK+ P+VL +SPT ELAIQT E
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYE 254
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 44.0 bits (99), Expect = 3e-05
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNK---NYPQV--LCLSPTYELAIQTGEVAAKMA 435
+N + Q+++GTGKT AF+L V K N ++ + LSPT ELA+Q E A K+
Sbjct: 77 ENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLT 136
Query: 436 KFCPEIKLKYAVRGEELPR 492
+ I++ YA+ G R
Sbjct: 137 -YGTGIRVSYAIGGNSKMR 154
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 42.7 bits (96), Expect = 8e-05
Identities = 26/81 (32%), Positives = 42/81 (51%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
+IL+ TPG++ + FD +++ +LDEAD +++ G + I LP Q M
Sbjct: 162 NILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILD-MGFRTTLDAIVSSLPVHRQTM 220
Query: 690 FFSATYGTAVMQFAEIIVSNP 752
FSAT +V A + + NP
Sbjct: 221 LFSATQTKSVKDLARLSLQNP 241
Score = 35.9 bits (79), Expect = 0.009
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNK----NYPQVLCLSPTYELAIQTGEVAAKMAK 438
++++ +++G+GKT AF++ ++ + K + L +SPT ELAIQT E K+ +
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGR 136
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 42.3 bits (95), Expect = 1e-04
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSN--KNYPQVLCLSPTYELAIQTGEVAAKMAK 438
++++ +++G+GKTAAFV+ M+ + S + + L LSP ELA+QT +V +K
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSK 164
Score = 40.7 bits (91), Expect = 3e-04
Identities = 24/81 (29%), Positives = 42/81 (51%)
Frame = +3
Query: 513 ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMF 692
I++ TPG+ V+ + ++ I+ V DEAD + G Q I LP++ Q +
Sbjct: 192 IVVATPGRFLHLKVEMKL-ELSSIEYVVFDEADRLFE-MGFAAQLTEILHALPTSRQTLL 249
Query: 693 FSATYGTAVMQFAEIIVSNPL 755
FSAT ++ FA+ + +P+
Sbjct: 250 FSATLPRTLVDFAKAGLQDPV 270
Score = 30.7 bits (66), Expect = 0.33
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 158 FEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
F+++ L LL+ ++ GF AP+ IQ +P
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIP 101
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 41.9 bits (94), Expect = 1e-04
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS-TCQM 686
++L+ TPG++ D F ++ V+DEAD I G +D+ +I K LPS Q
Sbjct: 213 NLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEAD-RILEIGFEDEMRQIMKILPSENRQT 271
Query: 687 MFFSATYGTAVMQFAEI 737
+ FSAT T V A I
Sbjct: 272 LLFSATQTTKVEDLARI 288
Score = 36.3 bits (80), Expect = 0.007
Identities = 19/61 (31%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQ----VLCLSPTYELAIQTGEVAAKMAK 438
++++ +++G+GKT AF++ + + + K P+ V+ +SPT ELA+Q VA ++ K
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLK 186
Query: 439 F 441
+
Sbjct: 187 Y 187
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 40.7 bits (91), Expect = 3e-04
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPE 450
+N I +++G+GKTAAF L ++ + + + L L+PT ELAIQ E + A
Sbjct: 45 RNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDE---QFAALGAN 101
Query: 451 IKLKYAV 471
+ LK+A+
Sbjct: 102 LNLKHAL 108
Score = 31.5 bits (68), Expect = 0.19
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Frame = +3
Query: 480 RTSQGFKNHSHILIGTPGKMFDWGVKFG---MFDMGKIKVFVLDEADVMINR--QGHQDQ 644
R S H+++ TPG++ D G + + +IK V+DEAD +++ D
Sbjct: 117 RQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDD 176
Query: 645 CIRIHKCLPST--CQMMFFSATYGTAVMQ 725
C + LP++ Q + F+AT A+ Q
Sbjct: 177 CFSV---LPASEDRQTLLFTATVTDAIRQ 202
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGE 417
+++I +Q+G+GKTAAF L ++ + +N + + L+PT ELA Q E
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISE 132
Score = 36.7 bits (81), Expect = 0.005
Identities = 21/82 (25%), Positives = 40/82 (48%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
H+L+ TPG++ D F + +K ++DEAD +++ +I K +P + +
Sbjct: 166 HVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLD-MDFGPIIDKILKIIPHERRTL 224
Query: 690 FFSATYGTAVMQFAEIIVSNPL 755
FSAT + V + + P+
Sbjct: 225 LFSATMTSKVEKLQRASLHQPV 246
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 152 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
KTF+ L + L + +GF P+ IQ+ A+P
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIP 78
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 36.7 bits (81), Expect = 0.005
Identities = 19/57 (33%), Positives = 35/57 (61%)
Frame = +3
Query: 507 SHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 677
+HI++ TPG++ D ++ +F + + V+DEAD M++ G +D +I LPS+
Sbjct: 376 AHIVVATPGRLLDC-LERRLFVLSQCTYVVMDEADRMLD-MGFEDDVNKILSSLPSS 430
Score = 31.5 bits (68), Expect = 0.19
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRV-------DSNKNY-PQVLCLSPTYELAIQTGEVAA 426
+++I +++G+GKTAAF++ ++ + +SN + P + L+PT ELA Q
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGN 346
Query: 427 KMAK 438
K A+
Sbjct: 347 KFAE 350
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 35.9 bits (79), Expect = 0.009
Identities = 26/80 (32%), Positives = 39/80 (48%)
Frame = +3
Query: 498 KNHSHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 677
KN S ++IGTPG++ + +++ +LDEAD +I+ G Q I LP
Sbjct: 131 KNPS-VVIGTPGRLNEM---LSHISSKHLEILILDEADTLID-MGFQRTLQSIISQLPKQ 185
Query: 678 CQMMFFSATYGTAVMQFAEI 737
+ FSAT V F +I
Sbjct: 186 RRTGLFSATMNDTVSSFLKI 205
Score = 33.9 bits (74), Expect = 0.035
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRV---DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKF 441
++++ ++ +G+GKT A++L +V D+++ L ++PT ELA Q V ++ +
Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAY 98
Query: 442 CPE 450
P+
Sbjct: 99 QPD 101
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 35.1 bits (77), Expect = 0.015
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Frame = +1
Query: 247 SYTLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNK-----NYPQVLCLSPTYELAIQT 411
++ +A ++M+ S +G+GKT ++ L + +++ + P VL L+PT ELA+Q
Sbjct: 152 AWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQI 211
Query: 412 GEVAAKMAK 438
+ K K
Sbjct: 212 QQECTKFGK 220
Score = 29.5 bits (63), Expect = 0.76
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 149 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
V TFE +LK V +GF AP+ IQ+ A P
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWP 154
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 34.7 bits (76), Expect = 0.020
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +3
Query: 519 IGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRI-HKCLPSTCQMMFF 695
IGTP ++ ++ G+ K++ FV+DEAD + G +Q I C S F
Sbjct: 171 IGTPMRLVQ-AIQTGL-SFEKVEFFVMDEADRLF-EPGFIEQTDHILSACTSSNICKSLF 227
Query: 696 SATYGTAVMQFAEIIVSNPL 755
SAT + V + A+++ +P+
Sbjct: 228 SATIPSRVEELAKVVTVDPI 247
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 34.7 bits (76), Expect = 0.020
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Frame = +3
Query: 504 HSHILIGTPGKMFDWGVKFGMF-DMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC 680
H H+++ TPG+++ + + + KIK VLDEAD ++ ++ H ++ ++ + L +
Sbjct: 242 HPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLL-QKSHFEELSKLLEILGNPM 300
Query: 681 ----QMMFFSATYGTAVMQ 725
Q FSAT+ + Q
Sbjct: 301 HTQRQTFIFSATFDEGLQQ 319
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 33.5 bits (73), Expect = 0.047
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +3
Query: 513 ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTC---- 680
+L TPG++ D + G + IK VLDEAD M++ G + Q I + T
Sbjct: 308 LLSATPGRLVDL-IDRGRISLANIKFLVLDEADRMLD-MGFEPQIRHIVEGADMTSVEER 365
Query: 681 QMMFFSATY 707
Q + FSAT+
Sbjct: 366 QTLMFSATF 374
Score = 29.5 bits (63), Expect = 0.76
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 18/76 (23%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLS----------RVDSN--------KNYPQVLCLSPTYE 396
++++A +Q+G+GKTA F+ +LS VD + K YP L L+PT E
Sbjct: 207 RDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRE 266
Query: 397 LAIQTGEVAAKMAKFC 444
L Q E + KFC
Sbjct: 267 LVCQIHE---ESRKFC 279
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 32.3 bits (70), Expect = 0.11
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 674
+ILIGTPG++ D D+ +++ VLDE D +++ G ++ +I L S
Sbjct: 271 NILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMD-MGFEETLTKILSYLES 324
Score = 25.8 bits (54), Expect = 9.4
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Frame = +1
Query: 286 QSQSGTGKTAAFVLAMLSR-VDSNKNYP------QVLCLSPTYELAIQTGEVAAKM 432
++Q+G+GKT A++L ++ R + KN + ++PT EL Q VA K+
Sbjct: 184 EAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKL 239
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 29.5 bits (63), Expect = 0.76
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 513 ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQD 641
+L+ TPG++ D F + ++ V+DEAD +++ Q QD
Sbjct: 263 VLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLD-QSFQD 304
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 27.1 bits (57), Expect = 4.1
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 280 IAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKL 459
I + G GKT + +D N N P L ++P + E AKFCP++K+
Sbjct: 409 ILADEMGLGKTCQTIAFFSLLMDKNINGPH-LVIAPASTMENWLRE----FAKFCPKLKI 463
Query: 460 K 462
+
Sbjct: 464 E 464
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 356 LLESTLLNIAKTKAAVFPVPDCDW 285
++E +LLN A A FP DW
Sbjct: 290 MMEQSLLNFAYNSAGAFPWESLDW 313
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,168,283
Number of Sequences: 5004
Number of extensions: 88968
Number of successful extensions: 304
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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