Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0796
         (983 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       40   3e-05
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.45 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   3.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   5.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   9.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   9.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 39.9 bits (89), Expect = 3e-05
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
 Frame = +3

Query: 474 RGRTSQGFKNHSHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINR--QGHQDQC 647
           RG+ S G     HIL+ TPG++ D+ V+ G      ++  VLDEAD M++       ++ 
Sbjct: 317 RGKLSAG----CHILVATPGRLLDF-VEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKM 371

Query: 648 IRIHKCLP-STCQMMFFSATYGTAVMQFAEIIVSNPL 755
           +     +P    Q + FSAT+   V   A   ++N L
Sbjct: 372 VDHETMVPLGERQTLMFSATFPDEVQHLARRFLNNYL 408



 Score = 35.1 bits (77), Expect = 0.001
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 9/64 (14%)
 Frame = +1

Query: 271 QNMIAQSQSGTGKTAAFVLAMLSR---------VDSNKNYPQVLCLSPTYELAIQTGEVA 423
           ++++A +Q+G+GKTAAF + +++          V S    PQV+ +SPT EL IQ  +  
Sbjct: 234 RDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQI 293

Query: 424 AKMA 435
            K +
Sbjct: 294 VKFS 297



 Score = 28.7 bits (61), Expect = 0.085
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 104 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
           +I++     N P   +++FEA  L+  +L  +   G+  P+ +Q+ ALP
Sbjct: 181 NIQVNVSGDNVP-QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALP 228


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 26.2 bits (55), Expect = 0.45
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 110 EIQRKDPNSPLYSVKTFEALHLKPNLL 190
           EI R   NSPL  ++  + LHL+ N +
Sbjct: 223 EITRLQENSPLLDLRQLQELHLQRNAI 249


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 785 WDNIKPYYVKCQS 823
           WD + PYY+K ++
Sbjct: 182 WDEVMPYYLKSEN 194


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 610 SASSNTKTLILPISNMPNLTPQSNIFPGVP 521
           SASSN        ++ PN   ++ IFP  P
Sbjct: 276 SASSNEHEAESEHTSTPNFLSEAKIFPPTP 305


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 14  RWAAALELVDPPGC 55
           RW    E VDP GC
Sbjct: 394 RWFTYQETVDPAGC 407


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 805 IWFYVIPVILLL 770
           IW YVIP+I ++
Sbjct: 226 IWAYVIPLIFII 237


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 805 IWFYVIPVILLL 770
           IW YVIP+I ++
Sbjct: 226 IWAYVIPLIFII 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 281,691
Number of Sequences: 438
Number of extensions: 6023
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32532591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)