Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0796
(983 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 69 5e-12
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 62 5e-10
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 60 2e-09
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 58 7e-09
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 58 1e-08
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 58 1e-08
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 56 5e-08
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 55 6e-08
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 55 6e-08
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 54 1e-07
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 54 2e-07
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 50 2e-06
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 49 4e-06
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 49 5e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 49 5e-06
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 48 7e-06
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 47 2e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 47 2e-05
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 46 3e-05
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 46 4e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 45 7e-05
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 44 2e-04
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 44 2e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 44 2e-04
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 44 2e-04
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 43 4e-04
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 43 4e-04
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 43 4e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 43 4e-04
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 42 5e-04
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 41 0.001
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 40 0.003
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 39 0.004
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 39 0.004
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 39 0.004
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 39 0.004
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 39 0.004
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 39 0.006
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 39 0.006
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 39 0.006
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 38 0.008
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 38 0.010
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 38 0.010
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 38 0.014
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 38 0.014
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 38 0.014
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 38 0.014
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 36 0.031
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 36 0.041
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 36 0.041
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 36 0.041
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 36 0.041
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 36 0.041
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 36 0.041
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 33 0.22
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 32 0.51
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 31 0.89
At3g60040.1 68416.m06705 F-box family protein contains a novel d... 31 1.2
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 31 1.6
At5g22710.1 68418.m02653 expressed protein 29 6.3
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 28 8.3
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 28 8.3
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 28 8.3
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 68.9 bits (161), Expect = 5e-12
Identities = 33/62 (53%), Positives = 41/62 (66%)
Frame = +1
Query: 256 LADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMA 435
+ P +++IAQ+ +G+GKT FVL MLSRVD PQ LC+ PT ELA Q EV KM
Sbjct: 127 MTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186
Query: 436 KF 441
KF
Sbjct: 187 KF 188
Score = 54.0 bits (124), Expect = 1e-07
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Frame = +3
Query: 486 SQGFKNHSHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKC 665
++G +H++IGTPG + W + F + +K+ V DEAD M+ G +D ++I K
Sbjct: 208 TRGAPVSAHVVIGTPGTLKKW-MAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKD 266
Query: 666 L---PSTCQMMFFSATYGTAVMQFAEIIVSNP 752
+ Q++ FSAT+ V F V +P
Sbjct: 267 IGRVNPNFQVLLFSATFNETVKDFVARTVKDP 298
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 131 NSPLYSVKTFEALHLKPNLLKGVYA-MGFNAPSKIQETALP 250
++P S FE L+L P L+KG+Y M F PSKIQ +LP
Sbjct: 84 DTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLP 124
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 62.1 bits (144), Expect = 5e-10
Identities = 36/117 (30%), Positives = 61/117 (52%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
H+++GTPG++FD +K IK+FVLDEAD M++R G +DQ I + LP Q+
Sbjct: 159 HVVVGTPGRVFDM-LKRQSLRADNIKMFVLDEADEMLSR-GFKDQIYDIFQLLPPKIQVG 216
Query: 690 FFSATYGTAVMQFAEIIVSNPL*SAFERRRITGIT*NHIM*SAKVQKTNFRAICNIY 860
FSAT ++ +S P+ +R +T + + ++ +C++Y
Sbjct: 217 VFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY 273
Score = 44.8 bits (101), Expect = 9e-05
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = +1
Query: 274 NMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEI 453
++I Q+QSGTGKTA F +L ++D + Q L L+PT ELA Q +V + + +
Sbjct: 78 DVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYL-GV 136
Query: 454 KLKYAVRGEELPRGSKI 504
K+ V G + +I
Sbjct: 137 KVHACVGGTSVREDQRI 153
Score = 38.7 bits (86), Expect = 0.006
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +2
Query: 152 KTFEALHLKPNLLKGVYAMGFNAPSKIQETAL 247
++F+A+ L+ NLL+G+YA GF PS IQ+ +
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGI 70
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 60.1 bits (139), Expect = 2e-09
Identities = 35/117 (29%), Positives = 61/117 (52%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
H+++GTPG++FD ++ IK+FVLDEAD M++R G +DQ I + LPS Q+
Sbjct: 161 HVVVGTPGRVFDL-LRRQSLRADAIKMFVLDEADEMLSR-GFKDQIYDIFQLLPSKVQVG 218
Query: 690 FFSATYGTAVMQFAEIIVSNPL*SAFERRRITGIT*NHIM*SAKVQKTNFRAICNIY 860
FSAT ++ ++ P+ +R +T + ++ +C++Y
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLY 275
Score = 44.4 bits (100), Expect = 1e-04
Identities = 26/77 (33%), Positives = 42/77 (54%)
Frame = +1
Query: 274 NMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEI 453
++I Q+QSGTGKTA F +L ++D + Q L L+PT ELA Q +V + + +
Sbjct: 80 DVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYL-GV 138
Query: 454 KLKYAVRGEELPRGSKI 504
K + V G + ++
Sbjct: 139 KAQACVGGTSVREDQRV 155
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/31 (48%), Positives = 24/31 (77%)
Frame = +2
Query: 155 TFEALHLKPNLLKGVYAMGFNAPSKIQETAL 247
+F+A+ L+P+LL+G+YA GF PS IQ+ +
Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGI 72
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 58.4 bits (135), Expect = 7e-09
Identities = 35/117 (29%), Positives = 60/117 (51%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
H+++GTPG++FD ++ IK+FVLDEAD M++R G +DQ I + LP Q+
Sbjct: 159 HVVVGTPGRVFDM-LRRQSLRPDCIKMFVLDEADEMLSR-GFKDQIYDIFQLLPPKIQVG 216
Query: 690 FFSATYGTAVMQFAEIIVSNPL*SAFERRRITGIT*NHIM*SAKVQKTNFRAICNIY 860
FSAT ++ +S P+ +R +T + + + +C++Y
Sbjct: 217 VFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLY 273
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/77 (35%), Positives = 41/77 (53%)
Frame = +1
Query: 274 NMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEI 453
++I Q+QSGTGKTA F +L ++D Q L L+PT ELA Q +V + + +
Sbjct: 78 DVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDY-QGV 136
Query: 454 KLKYAVRGEELPRGSKI 504
K+ V G + +I
Sbjct: 137 KVHACVGGTSVREDQRI 153
Score = 38.7 bits (86), Expect = 0.006
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +2
Query: 152 KTFEALHLKPNLLKGVYAMGFNAPSKIQETAL 247
++F+A+ L+ NLL+G+YA GF PS IQ+ +
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGI 70
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 57.6 bits (133), Expect = 1e-08
Identities = 25/65 (38%), Positives = 44/65 (67%)
Frame = +1
Query: 247 SYTLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAA 426
S +A +++A++++GTGKT AF + +L ++D N N Q + L PT ELA+QT +V
Sbjct: 154 SIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCK 213
Query: 427 KMAKF 441
+++K+
Sbjct: 214 ELSKY 218
Score = 45.2 bits (102), Expect = 7e-05
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
H+L+GTPG++ D K G+ + + V+DEAD +++ + Q + + LP Q +
Sbjct: 244 HLLVGTPGRILDL-TKKGVCVLKDCAMLVMDEADKLLSAE-FQPSLEELIQFLPQNRQFL 301
Query: 690 FFSATYGTAVMQFAEIIVSNP-L*SAFERRRITGIT 794
FSAT+ V F + + P + + ++ + G+T
Sbjct: 302 MFSATFPVTVKAFKDRHLRKPYVINLMDQLTLMGVT 337
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +2
Query: 158 FEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
FE LK +LLKG+Y GF PS IQE ++P
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIP 156
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 57.6 bits (133), Expect = 1e-08
Identities = 25/65 (38%), Positives = 44/65 (67%)
Frame = +1
Query: 247 SYTLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAA 426
S +A +++A++++GTGKT AF + +L ++D N N Q + L PT ELA+QT +V
Sbjct: 154 SIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCK 213
Query: 427 KMAKF 441
+++K+
Sbjct: 214 ELSKY 218
Score = 45.2 bits (102), Expect = 7e-05
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
H+L+GTPG++ D K G+ + + V+DEAD +++ + Q + + LP Q +
Sbjct: 244 HLLVGTPGRILDL-TKKGVCVLKDCAMLVMDEADKLLSAE-FQPSLEELIQFLPQNRQFL 301
Query: 690 FFSATYGTAVMQFAEIIVSNP-L*SAFERRRITGIT 794
FSAT+ V F + + P + + ++ + G+T
Sbjct: 302 MFSATFPVTVKAFKDRHLRKPYVINLMDQLTLMGVT 337
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +2
Query: 158 FEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
FE LK +LLKG+Y GF PS IQE ++P
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIP 156
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 55.6 bits (128), Expect = 5e-08
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
H + GTPG+++D +K G +K+ VLDE+D M+++ G +DQ +++ LP Q+
Sbjct: 142 HAVSGTPGRVYDM-IKRGSLQTKAVKLLVLDESDEMLSK-GLKDQIYDVYRALPHDIQVC 199
Query: 690 FFSATYGTAVMQFAEIIVSNPL*SAFERRRIT--GIT*NHIM*SAKVQKTNFRAICNIY 860
SAT +++ E +++P+ + +T GI ++ ++ F +C++Y
Sbjct: 200 LISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYV--DVDKEEWKFDTLCDLY 256
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQT 411
+++IAQ+QSGTGKT+ +++ V+ + QVL LSP+ ELA QT
Sbjct: 60 RDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQT 106
Score = 35.9 bits (79), Expect = 0.041
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +2
Query: 89 VESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETAL 247
+E LD E + + +K+F+ + + +L+GVY G+ PS+IQ+ AL
Sbjct: 1 MEGTLDEENLVFETTKGIKPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRAL 53
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 55.2 bits (127), Expect = 6e-08
Identities = 24/64 (37%), Positives = 44/64 (68%)
Frame = +1
Query: 247 SYTLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAA 426
S +A ++++A++++GTGKTAAF + +L ++D + N Q + + PT ELA+QT +V
Sbjct: 161 SIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCK 220
Query: 427 KMAK 438
++ K
Sbjct: 221 ELGK 224
Score = 52.8 bits (121), Expect = 3e-07
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
H+L+GTPG++ D K G+ + V V+DEAD +++++ Q + LP + Q++
Sbjct: 251 HLLVGTPGRILDL-TKKGVCVLKDCSVLVMDEADKLLSQE-FQPSVEHLISFLPESRQIL 308
Query: 690 FFSATYGTAVMQFAEIIVSNP-L*SAFERRRITGIT 794
FSAT+ V F + ++NP + + + + GIT
Sbjct: 309 MFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGIT 344
Score = 35.9 bits (79), Expect = 0.041
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 158 FEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
FE LK LL G+Y GF PS IQE ++P
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIP 163
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 55.2 bits (127), Expect = 6e-08
Identities = 24/64 (37%), Positives = 44/64 (68%)
Frame = +1
Query: 247 SYTLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAA 426
S +A ++++A++++GTGKTAAF + +L ++D + N Q + + PT ELA+QT +V
Sbjct: 161 SIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCK 220
Query: 427 KMAK 438
++ K
Sbjct: 221 ELGK 224
Score = 52.8 bits (121), Expect = 3e-07
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
H+L+GTPG++ D K G+ + V V+DEAD +++++ Q + LP + Q++
Sbjct: 251 HLLVGTPGRILDL-TKKGVCVLKDCSVLVMDEADKLLSQE-FQPSVEHLISFLPESRQIL 308
Query: 690 FFSATYGTAVMQFAEIIVSNP-L*SAFERRRITGIT 794
FSAT+ V F + ++NP + + + + GIT
Sbjct: 309 MFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGIT 344
Score = 35.9 bits (79), Expect = 0.041
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 158 FEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
FE LK LL G+Y GF PS IQE ++P
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIP 163
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/65 (36%), Positives = 42/65 (64%)
Frame = +1
Query: 247 SYTLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAA 426
S +A +++A++++GTGKT AF + L ++D N Q + L PT ELA+QT +V
Sbjct: 184 SIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCK 243
Query: 427 KMAKF 441
+++K+
Sbjct: 244 ELSKY 248
Score = 47.6 bits (108), Expect = 1e-05
Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
H+L+GTPG++ D K G+ + + V+DEAD +++ + Q + + LP + Q++
Sbjct: 274 HLLVGTPGRILDLAKK-GVCVLKDCAMLVMDEADKLLSVE-FQPSIEELIQFLPESRQIL 331
Query: 690 FFSATYGTAVMQFAEIIVSNP-L*SAFERRRITGIT 794
FSAT+ V F + + P + + ++ + G+T
Sbjct: 332 MFSATFPVTVKSFKDRYLKKPYIINLMDQLTLMGVT 367
Score = 37.5 bits (83), Expect = 0.014
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +2
Query: 158 FEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
FE LK +LL+G+Y GF PS IQE ++P
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIP 186
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 53.6 bits (123), Expect = 2e-07
Identities = 30/117 (25%), Positives = 60/117 (51%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
H++ GTPG++ D +K IK+ +LDE+D M++R G +DQ +++ LP Q+
Sbjct: 155 HVVSGTPGRVCDM-IKRRSLRTRAIKLLILDESDEMLSR-GFKDQIYDVYRYLPPDLQVC 212
Query: 690 FFSATYGTAVMQFAEIIVSNPL*SAFERRRITGIT*NHIM*SAKVQKTNFRAICNIY 860
SAT +++ ++ P+ +R +T + + ++ F +C++Y
Sbjct: 213 LVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY 269
Score = 48.8 bits (111), Expect = 5e-06
Identities = 24/47 (51%), Positives = 33/47 (70%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQT 411
+++IAQ+QSGTGKT+ L++ VD++ Q L LSPT ELA QT
Sbjct: 73 RDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQT 119
Score = 33.1 bits (72), Expect = 0.29
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 149 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETAL 247
+ +F + +K ++L+GVY GF PS IQ+ A+
Sbjct: 34 ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAV 66
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 50.4 bits (115), Expect = 2e-06
Identities = 29/81 (35%), Positives = 47/81 (58%)
Frame = +3
Query: 513 ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMF 692
+++GTPG++ D ++ +G+++ VLDEAD M+ G ++ I + LP+ Q M
Sbjct: 231 VVVGTPGRIIDL-IEGRSLKLGEVEYLVLDEADQML-AVGFEEAVESILENLPTKRQSML 288
Query: 693 FSATYGTAVMQFAEIIVSNPL 755
FSAT T V + A + NPL
Sbjct: 289 FSATMPTWVKKLARKYLDNPL 309
Score = 35.5 bits (78), Expect = 0.055
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDS----------NKNYPQVLCLSPTYELAIQT--- 411
+++IA++++GTGKT AF + ++ R+ + P+ L L+PT ELA Q
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE 199
Query: 412 -GEVAAKMAKFCPEIKLKYAVRGEELPRGSKITV 510
E A ++ C + Y ++ L RG + V
Sbjct: 200 IKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVV 233
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 49.2 bits (112), Expect = 4e-06
Identities = 28/82 (34%), Positives = 44/82 (53%)
Frame = +3
Query: 507 SHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 686
+++LIGTPG++ D + D +++ +LDEAD +++ G Q Q I LP +
Sbjct: 136 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLD-MGFQKQVNYIISRLPKQRRT 194
Query: 687 MFFSATYGTAVMQFAEIIVSNP 752
FSAT AV A+ + NP
Sbjct: 195 GLFSATQTQAVADLAKAGLRNP 216
Score = 33.9 bits (74), Expect = 0.17
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYP----QVL--CLSPTYELAIQTGEVA 423
++++ + +G+GKT AF+L + + + +YP QV+ +SPT EL+ Q +VA
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVA 111
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 48.8 bits (111), Expect = 5e-06
Identities = 28/81 (34%), Positives = 47/81 (58%)
Frame = +3
Query: 513 ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMF 692
+ +GTPG++ D +K G ++ +++ VLDEAD M+ +D I + K LP+ Q M
Sbjct: 241 VAVGTPGRIIDL-MKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQK-LPAKRQSMM 298
Query: 693 FSATYGTAVMQFAEIIVSNPL 755
FSAT + + + ++NPL
Sbjct: 299 FSATMPSWIRSLTKKYLNNPL 319
Score = 34.7 bits (76), Expect = 0.095
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 7/53 (13%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRV-------DSNKNYPQVLCLSPTYELAIQ 408
++MI ++++GTGKT AF + ++ ++ KN PQ L L+PT ELA Q
Sbjct: 154 RDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKN-PQCLVLAPTRELARQ 205
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 48.8 bits (111), Expect = 5e-06
Identities = 29/94 (30%), Positives = 48/94 (51%)
Frame = +3
Query: 474 RGRTSQGFKNHSHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIR 653
R +Q + S+++I TPG++ D F +K V+DEAD ++ +D +
Sbjct: 201 RRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDM-NK 259
Query: 654 IHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPL 755
I K LP T Q FSAT + V A + +++P+
Sbjct: 260 ILKILPKTRQTALFSATQTSKVKDLARVSLTSPV 293
Score = 36.3 bits (80), Expect = 0.031
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQ----VLCLSPTYELAIQTGEVAAKMAK 438
++++ +++G+GKT AF++ + + + P+ V+ + PT ELAIQT VA ++ K
Sbjct: 127 KDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLK 186
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 48.4 bits (110), Expect = 7e-06
Identities = 28/81 (34%), Positives = 46/81 (56%)
Frame = +3
Query: 513 ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMF 692
+ +GTPG++ D +K G ++ +++ VLDEAD M+ +D I + K LP Q M
Sbjct: 229 VAVGTPGRVIDL-MKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEK-LPEKRQSMM 286
Query: 693 FSATYGTAVMQFAEIIVSNPL 755
FSAT + + + ++NPL
Sbjct: 287 FSATMPSWIRSLTKKYLNNPL 307
Score = 31.5 bits (68), Expect = 0.89
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRV------DSNKNYPQVLCLSPTYELAIQ 408
++MI ++++GTGKT AF + ++ ++ P L L+PT ELA Q
Sbjct: 142 RDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQ 193
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 47.2 bits (107), Expect = 2e-05
Identities = 27/82 (32%), Positives = 44/82 (53%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
++LIGTPG++ D + + D +++ +LDEAD ++ G Q Q I LP +
Sbjct: 144 NVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLL-EMGFQRQVNYIISRLPKQRRTG 202
Query: 690 FFSATYGTAVMQFAEIIVSNPL 755
FSAT V + A+ + NP+
Sbjct: 203 LFSATQTEGVEELAKAGLRNPV 224
Score = 33.1 bits (72), Expect = 0.29
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYP----QVL--CLSPTYELAIQTGEVAAKM 432
+++ + +G+GKT AFV+ ++ + + ++P QV+ +SPT EL+ Q VA
Sbjct: 54 KDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPF 113
Query: 433 AKFCPEIKLKYAVRGEELPRGSKI 504
+ V G E+ KI
Sbjct: 114 VSTLANVNSVLLVGGREVKADMKI 137
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +3
Query: 507 SHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 686
+++LIGTPG++ D + D +++ +LDEAD +++ G Q Q I LP +
Sbjct: 143 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLD-MGFQKQVNYIISRLPKQRRT 201
Query: 687 MFFSATYGTAVMQFAEIIVSNPL 755
FSAT AV A+ + N +
Sbjct: 202 GLFSATQTQAVADLAKAGLRNAM 224
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYP----QVL--CLSPTYELAIQTGEVAAKM 432
++++ + +G+GKT AF+L + + + +YP QV+ +SPT EL+ Q +VA
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPF 113
Query: 433 AKFCPEIKLKYAVRGEEL 486
P + V G E+
Sbjct: 114 VSTLPNVNSVLLVGGREV 131
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 46.4 bits (105), Expect = 3e-05
Identities = 26/82 (31%), Positives = 41/82 (50%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
++L+ TPG++ D F +K V+DEAD I Q ++ +I LP T Q
Sbjct: 278 NLLVATPGRLLDHLENTNGFIFKNLKFLVMDEAD-RILEQNFEEDLKKILNLLPKTRQTS 336
Query: 690 FFSATYGTAVMQFAEIIVSNPL 755
FSAT V A + +++P+
Sbjct: 337 LFSATQSAKVEDLARVSLTSPV 358
Score = 35.9 bits (79), Expect = 0.041
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +2
Query: 104 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
D E ++K + + + KTFE+L L N K + MGF ++IQ A+P
Sbjct: 138 DKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIP 186
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 46.0 bits (104), Expect = 4e-05
Identities = 26/94 (27%), Positives = 52/94 (55%)
Frame = +3
Query: 474 RGRTSQGFKNHSHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIR 653
+G + + + I++ TPG++ D ++ M D ++ + VLDEAD M++ G + Q +
Sbjct: 547 KGPQLKELERGADIVVATPGRLNDI-LEMKMIDFQQVSLLVLDEADRMLD-MGFEPQIRK 604
Query: 654 IHKCLPSTCQMMFFSATYGTAVMQFAEIIVSNPL 755
I +P Q + ++AT+ V + A ++ NP+
Sbjct: 605 IVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPV 638
Score = 36.7 bits (81), Expect = 0.024
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Frame = +1
Query: 247 SYTLADPPQNMIAQSQSGTGKTA-----AFVLAMLSRVDSNKNYPQVLCLSPTYELAIQT 411
++ +A ++++A +++G+GKT AF+L R DS +N P VL L+PT ELA Q
Sbjct: 465 TWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDS-RNGPTVLILAPTRELATQI 523
Query: 412 GEVAAKMAK 438
+ A + +
Sbjct: 524 QDEALRFGR 532
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 45.2 bits (102), Expect = 7e-05
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Frame = +3
Query: 513 ILIGTPG---KMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQ 683
IL+ TP K F GV + + VLDEAD++++ G++D + +P CQ
Sbjct: 175 ILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLS-YGYEDNLRSVTSIIPRRCQ 233
Query: 684 MMFFSATYGTAVMQFAEIIVSNPL 755
+ SAT + V + ++I+ NP+
Sbjct: 234 CLLMSATTSSDVEKLKKLILHNPI 257
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 110 EIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
E ++K+ +P K+FE L L L++ + G P+ IQ++A+P
Sbjct: 36 EEEQKEEEAP----KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIP 78
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 44.0 bits (99), Expect = 2e-04
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = +3
Query: 513 ILIGTPGKMFDW-GVKFGMFD-MGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 686
ILI TPG++ D K G+ + +K+F++DEAD++++ G + +I CLP Q
Sbjct: 507 ILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDL-GFKRDVEKIIDCLPRQRQS 565
Query: 687 MFFSATYGTAVMQFAEIIV 743
+ FSAT V + +++++
Sbjct: 566 LLFSATIPKEVRRVSQLVL 584
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 44.0 bits (99), Expect = 2e-04
Identities = 23/73 (31%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Frame = +1
Query: 274 NMIAQSQSGTGKTAAFVLAMLSRVDSN--KNYPQVLCLSPTYELAIQTGEVAAKMAKFCP 447
+++A +++G+GKTAAF++ ML ++ + + + L LSPT +LA QT + ++ KF
Sbjct: 67 DVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKF-T 125
Query: 448 EIKLKYAVRGEEL 486
++++ V G+ +
Sbjct: 126 DLRVSLLVGGDSM 138
Score = 35.9 bits (79), Expect = 0.041
Identities = 22/80 (27%), Positives = 39/80 (48%)
Frame = +3
Query: 513 ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMF 692
++I TPG++ + + ++ V DEAD + G +Q +I L Q +
Sbjct: 151 VIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFG-MGFAEQLHQILTQLSENRQTLL 209
Query: 693 FSATYGTAVMQFAEIIVSNP 752
FSAT +A+ +FA+ + P
Sbjct: 210 FSATLPSALAEFAKAGLREP 229
Score = 32.7 bits (71), Expect = 0.38
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 110 EIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
E+ RK+ FE+L+L PN+ + G+ P+ IQ +P
Sbjct: 14 ELHRKEKQKKKGKSGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMP 60
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 44.0 bits (99), Expect = 2e-04
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = +3
Query: 513 ILIGTPGKMFDW-GVKFGMFD-MGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQM 686
ILI TPG++ D K G+ + +K+F++DEAD++++ G + +I CLP Q
Sbjct: 460 ILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDL-GFRRDVEKIIDCLPRQRQS 518
Query: 687 MFFSATYGTAVMQFAEIIV 743
+ FSAT V + +++++
Sbjct: 519 LLFSATIPKEVRRVSQLVL 537
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVL----AMLSRVDSNKNYPQV-----LCLSPTYELAIQTGEVA 423
++ + ++++GTGK+ AF+L +L ++S K +V L L PT ELA Q
Sbjct: 366 KDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEG 425
Query: 424 AKMAKFCPEIKLKYAVRG 477
+ KF I ++ + G
Sbjct: 426 KALLKFHDGIGVQTLIGG 443
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRV--------DSNKNYPQVLCLSPTYELAIQTGEVAA 426
++++A++++GTGKT AF+L + V DS + VL + PT ELA Q A
Sbjct: 420 KDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEAN 479
Query: 427 KMAKFCPEIKLKYAVRGEELP 489
+ K+ P I ++ + G +LP
Sbjct: 480 TLLKYHPSIGVQVVIGGTKLP 500
Score = 38.3 bits (85), Expect = 0.008
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +3
Query: 501 NHSHILIGTPGKMFDWGVKFGMFD---MGKIKVFVLDEADVMINRQGHQDQCIRIHKCLP 671
N IL+ TPG++ D F MG +KV VLDEAD +++ G + RI +P
Sbjct: 509 NPCQILVATPGRLKDHIENTSGFATRLMG-VKVLVLDEADHLLD-MGFRRDIERIIAAVP 566
Query: 672 STCQMMFFSATYGTAVMQFAEI 737
Q FSAT V Q +
Sbjct: 567 KQRQTFLFSATVPEEVRQICHV 588
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 42.7 bits (96), Expect = 4e-04
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +1
Query: 274 NMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEI 453
++I Q++SG GKTA FVL+ L +++ + L L T ELA Q + + + P+
Sbjct: 85 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 144
Query: 454 KL 459
K+
Sbjct: 145 KV 146
Score = 41.9 bits (94), Expect = 6e-04
Identities = 22/82 (26%), Positives = 40/82 (48%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
HI++GTPG++ + + + ++ F+LDE D M+ + I K P Q+M
Sbjct: 168 HIVVGTPGRVLALAREKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Query: 690 FFSATYGTAVMQFAEIIVSNPL 755
FSAT + + + +P+
Sbjct: 227 MFSATLSKEIRPVCKKFMQDPM 248
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 158 FEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
F LKP LL+ + GF PS++Q +P
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIP 78
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 42.7 bits (96), Expect = 4e-04
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +1
Query: 274 NMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEI 453
++I Q++SG GKTA FVL+ L +++ + L L T ELA Q + + + P+
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 454 KL 459
K+
Sbjct: 62 KV 63
Score = 41.9 bits (94), Expect = 6e-04
Identities = 22/82 (26%), Positives = 40/82 (48%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
HI++GTPG++ + + + ++ F+LDE D M+ + I K P Q+M
Sbjct: 85 HIVVGTPGRVLALAREKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 143
Query: 690 FFSATYGTAVMQFAEIIVSNPL 755
FSAT + + + +P+
Sbjct: 144 MFSATLSKEIRPVCKKFMQDPM 165
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 42.7 bits (96), Expect = 4e-04
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +1
Query: 274 NMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEI 453
++I Q++SG GKTA FVL+ L +++ + L L T ELA Q + + + P+
Sbjct: 85 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 144
Query: 454 KL 459
K+
Sbjct: 145 KV 146
Score = 41.9 bits (94), Expect = 6e-04
Identities = 22/82 (26%), Positives = 40/82 (48%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
HI++GTPG++ + + + ++ F+LDE D M+ + I K P Q+M
Sbjct: 168 HIVVGTPGRVLALAREKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226
Query: 690 FFSATYGTAVMQFAEIIVSNPL 755
FSAT + + + +P+
Sbjct: 227 MFSATLSKEIRPVCKKFMQDPM 248
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 158 FEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
F LKP LL+ + GF PS++Q +P
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIP 78
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 42.7 bits (96), Expect = 4e-04
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRV-------DSNKNYPQ-VLCLSPTYELAIQTGEVAA 426
++++A++++GTGKT AF+L + V N++ P VL + PT ELA Q A
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEAN 177
Query: 427 KMAKFCPEIKLKYAVRGEELP 489
+ K+ P I ++ + G +LP
Sbjct: 178 ILLKYHPSIGVQVVIGGTKLP 198
Score = 39.9 bits (89), Expect = 0.003
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +3
Query: 498 KNHSHILIGTPGKM---FDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL 668
K+ IL+ TPG++ D F MG +KV VLDEAD +++ G + + RI +
Sbjct: 206 KSPCQILVATPGRLKDHIDNTSGFATRLMG-VKVLVLDEADHLLD-MGFRREIERIIAAV 263
Query: 669 PSTCQMMFFSATYGTAVMQFAEI 737
P Q FSAT V Q +
Sbjct: 264 PKQRQTFLFSATVSDEVRQICHV 286
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 134 SPLYSVKT-FEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
S Y KT F+ L P LKG+ GF + +QE LP
Sbjct: 73 SDSYLSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLP 112
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 42.3 bits (95), Expect = 5e-04
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
H+++ TPG+++D F + +K VLDEAD ++N + + +I + +P +
Sbjct: 141 HVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLN-EDFEKSLNQILEEIPLERKTF 199
Query: 690 FFSATYGTAVMQFAEIIVSNPL 755
FSAT V + + NP+
Sbjct: 200 LFSATMTKKVRKLQRACLRNPV 221
Score = 33.5 bits (73), Expect = 0.22
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 149 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
VKTF L ++ L+K +G+ PSKIQ ALP
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALP 41
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 41.1 bits (92), Expect = 0.001
Identities = 26/86 (30%), Positives = 41/86 (47%)
Frame = +3
Query: 498 KNHSHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 677
K HI++ TPG++ D K M + + LDEAD +++ G +D + S
Sbjct: 276 KRGVHIVVATPGRLKDMLAKKKM-SLDACRYLTLDEADRLVD-LGFEDDIREVFDHFKSQ 333
Query: 678 CQMMFFSATYGTAVMQFAEIIVSNPL 755
Q + FSAT T + FA + P+
Sbjct: 334 RQTLLFSATMPTKIQIFARSALVKPV 359
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 39.9 bits (89), Expect = 0.003
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQ----VLCLSPTYELAIQTGEVAAKMAK 438
++++ +++G+GKT AFV+ +L ++ + P+ + +SPT ELA QT V K+ K
Sbjct: 109 RDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGK 168
Query: 439 F 441
F
Sbjct: 169 F 169
Score = 36.3 bits (80), Expect = 0.031
Identities = 22/81 (27%), Positives = 41/81 (50%)
Frame = +3
Query: 510 HILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMM 689
+IL+ PG++ + F+ ++++ +LDEAD +++ + Q I LP Q +
Sbjct: 195 NILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLD-SAFKGQLDPIISQLPKHRQTL 253
Query: 690 FFSATYGTAVMQFAEIIVSNP 752
FSAT V A + + +P
Sbjct: 254 LFSATQTKKVKDLARLSLRDP 274
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 39.1 bits (87), Expect = 0.004
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRV-------DSNKNYP-QVLCLSPTYELAIQTGEVAA 426
++++A++++GTGKT AF+L + V NK P L + PT ELA Q A
Sbjct: 92 KDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEAN 151
Query: 427 KMAKFCPEIKLKYAVRGEEL 486
+ K+ P I ++ + G L
Sbjct: 152 TLLKYHPSIGVQVVIGGTRL 171
Score = 37.1 bits (82), Expect = 0.018
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 501 NHSHILIGTPGKMFDWGVKFGMFD--MGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPS 674
N IL+ TPG++ D F + +KV VLDEAD +++ G + RI +P
Sbjct: 181 NPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLD-MGFRKDIERIISAVPK 239
Query: 675 TCQMMFFSATYGTAVMQ 725
Q FSAT V Q
Sbjct: 240 ERQTFLFSATVPEEVRQ 256
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 39.1 bits (87), Expect = 0.004
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Frame = +1
Query: 256 LADPPQNMIAQSQSGTGKTAAFVLAMLSRV---DSNKNYPQVLCLSPTYELAIQTGEVAA 426
LA +++ A + +G+GKTAAF L L R+ +VL L+PT ELA+Q +
Sbjct: 200 LALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQ 259
Query: 427 KMAKFCPEIKLKYAVRG 477
+A+F +IK V G
Sbjct: 260 NLAQF-TDIKCGLIVGG 275
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 39.1 bits (87), Expect = 0.004
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVD-----SNKNY---PQVLCLSPTYELAIQTGEVAA 426
+++I +++G+GKTAAFVL ML+ + S +N P + ++PT ELA Q E
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETV 410
Query: 427 KMAKFCPEIKLKYAVRGEEL-PRGSKIT 507
K A + ++ V G+ + +G KIT
Sbjct: 411 KFAHYL-GFRVTSIVGGQSIEEQGLKIT 437
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 104 DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
D I K P ++++E L LLK V G+ PS IQ A+P
Sbjct: 298 DFNISYKGSRIPR-PMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIP 345
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 39.1 bits (87), Expect = 0.004
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Frame = +3
Query: 474 RGRTSQGFKNHSHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIR 653
+G ++ I+IGTPG++ D ++ + + + VLDEAD M++ G ++
Sbjct: 231 KGPQISAIRSGVDIVIGTPGRLRDL-IESNVLRLSDVSFVVLDEADRMLD-MGFEEPVRF 288
Query: 654 IHKCLPSTCQMMFFSATYGTAVMQFA-EIIVSNPL 755
I QM+ FSAT+ V + A E + NP+
Sbjct: 289 ILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPI 323
Score = 33.9 bits (74), Expect = 0.17
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRV---------DSNKNYPQVLCLSPTYELAIQTGEVA 423
+++I +++G+GKT AF + + V S K P L LSPT ELA+Q +V
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVL 211
Query: 424 AKMAKFC 444
+ + C
Sbjct: 212 REAGEPC 218
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/72 (31%), Positives = 39/72 (54%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPE 450
++++ +Q+G+GKTAAF L +L R+ + L ++PT ELA Q E K C
Sbjct: 96 RDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAE-QFKALGSCLN 154
Query: 451 IKLKYAVRGEEL 486
++ V G ++
Sbjct: 155 LRCSVIVGGMDM 166
Score = 37.1 bits (82), Expect = 0.018
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +3
Query: 579 KIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMFFSAT 704
+ K VLDEAD +++ G QD+ I +CLP + Q + FSAT
Sbjct: 203 RTKFLVLDEADRVLD-VGFQDELRTIFQCLPKSRQTLLFSAT 243
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 38.7 bits (86), Expect = 0.006
Identities = 25/86 (29%), Positives = 41/86 (47%)
Frame = +3
Query: 498 KNHSHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPST 677
K HI++ TPG++ D K M + ++ LDEAD +++ G +D + S
Sbjct: 227 KKGVHIVVATPGRLKDILAKKKM-SLDACRLLTLDEADRLVD-LGFEDDIRHVFDHFKSQ 284
Query: 678 CQMMFFSATYGTAVMQFAEIIVSNPL 755
Q + FSAT + FA + P+
Sbjct: 285 RQTLLFSATMPAKIQIFATSALVKPV 310
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 38.7 bits (86), Expect = 0.006
Identities = 27/81 (33%), Positives = 41/81 (50%)
Frame = +3
Query: 513 ILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCLPSTCQMMF 692
I++ TPG++ D +K M + VLDEAD M + G + Q I + Q +
Sbjct: 354 IVVATPGRLIDM-LKMKALTMMRASYLVLDEADRMFDL-GFEPQVRSIVGQIRPDRQTLL 411
Query: 693 FSATYGTAVMQFAEIIVSNPL 755
FSAT V + A I+S+P+
Sbjct: 412 FSATMPWKVEKLAREILSDPI 432
Score = 31.5 bits (68), Expect = 0.89
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQ------VLCLSPTYELAIQTGEVAAKM 432
+++I +++G+GKTAAFVL M+ + + V+C +PT ELA Q A K
Sbjct: 266 RDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVIC-APTRELAHQIFLEAKKF 324
Query: 433 AK 438
+K
Sbjct: 325 SK 326
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 38.7 bits (86), Expect = 0.006
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +2
Query: 134 SPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
SPL+S K+FE L L +LL + GF+ P+ +Q A+P
Sbjct: 104 SPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVP 142
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 38.3 bits (85), Expect = 0.008
Identities = 17/55 (30%), Positives = 34/55 (61%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMA 435
++ I +Q+G+GKT ++L + S ++ ++ Q + + PT EL +Q +VA +A
Sbjct: 114 RDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKVARMLA 168
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 37.9 bits (84), Expect = 0.010
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRV---------DSNKNYPQVLCLSPTYELAIQTGEVA 423
++++A + +G+GKTA+F++ ++SR D +N P + L+PT EL +Q + A
Sbjct: 148 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRN-PLAMVLAPTRELCVQVEDQA 206
Query: 424 AKMAKFCPEIKLKYAVRGEEL 486
+ K P K V G+ +
Sbjct: 207 KMLGKGLP-FKTALVVGGDPM 226
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 37.9 bits (84), Expect = 0.010
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRV---------DSNKNYPQVLCLSPTYELAIQTGEVA 423
++++A + +G+GKTA+F++ ++SR D +N P + L+PT EL +Q + A
Sbjct: 11 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRN-PLAMVLAPTRELCVQVEDQA 69
Query: 424 AKMAKFCPEIKLKYAVRGEEL 486
+ K P K V G+ +
Sbjct: 70 KMLGKGLP-FKTALVVGGDPM 89
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 37.5 bits (83), Expect = 0.014
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +1
Query: 247 SYTLADPPQNMIAQSQSGTGKTAAFVLA---MLSRVDSNKNY-PQVLCLSPTYELAIQTG 414
S+ +A ++++A +++G+GKT +++ L R+ ++ P +L LSPT ELA Q
Sbjct: 188 SWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQ 247
Query: 415 EVAAKMAK 438
E A K +
Sbjct: 248 EEAVKFGR 255
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 155 TFEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
+FEA P LL+ V + GF+AP+ IQ + P
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP 190
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 37.5 bits (83), Expect = 0.014
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +1
Query: 247 SYTLADPPQNMIAQSQSGTGKTAAFVLA---MLSRVDSNKNY-PQVLCLSPTYELAIQTG 414
S+ +A ++++A +++G+GKT +++ L R+ ++ P +L LSPT ELA Q
Sbjct: 188 SWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQ 247
Query: 415 EVAAKMAK 438
E A K +
Sbjct: 248 EEAVKFGR 255
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 155 TFEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
+FEA P LL+ V + GF+AP+ IQ + P
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP 190
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 37.5 bits (83), Expect = 0.014
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +1
Query: 247 SYTLADPPQNMIAQSQSGTGKTAAFVLA---MLSRVDSNKNY-PQVLCLSPTYELAIQTG 414
S+ +A ++++A +++G+GKT +++ L R+ ++ P +L LSPT ELA Q
Sbjct: 188 SWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQ 247
Query: 415 EVAAKMAK 438
E A K +
Sbjct: 248 EEAVKFGR 255
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 155 TFEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
+FEA P LL+ V + GF+AP+ IQ + P
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP 190
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 37.5 bits (83), Expect = 0.014
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Frame = +1
Query: 241 STSYTLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNK-----NYPQVLCLSPTYELAI 405
S + +A +++I +++G+GKT +++L + V++ + P VL L+PT ELA+
Sbjct: 127 SQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAV 186
Query: 406 QTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI 504
Q + + +KF K+K +P+G ++
Sbjct: 187 Q---IQQEASKFGSSSKIKTTCIYGGVPKGPQV 216
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 36.3 bits (80), Expect = 0.031
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKN----------YPQVLCLSPTYELAIQTGEV 420
++++A +Q+G+GKTAAF ++S + +++ YP + LSPT ELA Q +
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDE 243
Query: 421 AAKMA 435
A K +
Sbjct: 244 ARKFS 248
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 35.9 bits (79), Expect = 0.041
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNY-----PQVLCLSPTYELAIQTGEVAAK 429
+++I +++G+GKT A++L L V + P VL L+PT ELA+Q E + K
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRK 260
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 86 LVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
+ ++ DI ++ +D P+ K F+ + N+L+ + +GF P+ IQ P
Sbjct: 146 MYRTERDISVEGRDVPKPM---KMFQDANFPDNILEAIAKLGFTEPTPIQAQGWP 197
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 35.9 bits (79), Expect = 0.041
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKNY-----PQVLCLSPTYELAIQTGEVAAK 429
+++I +++G+GKT A++L L V + P VL L+PT ELA+Q E + K
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRK 260
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 86 LVESKLDIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALP 250
+ ++ DI ++ +D P+ K F+ + N+L+ + +GF P+ IQ P
Sbjct: 146 MYRTERDISVEGRDVPKPM---KMFQDANFPDNILEAIAKLGFTEPTPIQAQGWP 197
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 35.9 bits (79), Expect = 0.041
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Frame = +1
Query: 247 SYTLADPPQNMIAQSQSGTGKTAAFVLA---MLSRVDSNKNY-PQVLCLSPTYELAIQTG 414
S+ +A ++++A +++G+GKT +++ L R+ ++ P +L LSPT ELA Q
Sbjct: 259 SWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQ 318
Query: 415 EVAAKMAK 438
A K K
Sbjct: 319 VEALKFGK 326
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 35.9 bits (79), Expect = 0.041
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKN----------YPQVLCLSPTYELAIQTGEV 420
++++A +Q+G+GKTAAF ++S + +++ YP + LSPT ELA Q +
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 421 AAKMA 435
A K +
Sbjct: 249 AKKFS 253
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 35.9 bits (79), Expect = 0.041
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKN----------YPQVLCLSPTYELAIQTGEV 420
++++A +Q+G+GKTAAF ++S + +++ YP + LSPT ELA Q +
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 421 AAKMA 435
A K +
Sbjct: 249 AKKFS 253
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 35.9 bits (79), Expect = 0.041
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNKN----------YPQVLCLSPTYELAIQTGEV 420
++++A +Q+G+GKTAAF ++S + +++ YP + LSPT ELA Q +
Sbjct: 197 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDE 256
Query: 421 AAKMA 435
A K +
Sbjct: 257 AKKFS 261
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 33.5 bits (73), Expect = 0.22
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +3
Query: 498 KNHSHILIGTPGKMFDW---GVKFGMFDMGKIKVFVLDEADVMINRQGHQDQCIRIHKCL 668
K I++ TPG++++ G K + ++ + FVLDEAD M+ R GH + I L
Sbjct: 327 KEKPEIVVATPGRLWELMSAGEKH-LVELHSLSFFVLDEADRMVER-GHFRELQSILDLL 384
Query: 669 PST 677
P T
Sbjct: 385 PVT 387
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 32.3 bits (70), Expect = 0.51
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 283 AQSQSGTGKTAAFVLAMLSRVD-SNKNYPQVLCLSPTYELAIQTGEVAAKMAK 438
A + +G+GKT AF+ ML ++ + + + + LSP ELA QT K+ K
Sbjct: 183 ACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQTAREGKKLIK 235
Score = 32.3 bits (70), Expect = 0.51
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +3
Query: 480 RTSQGFKNHSHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINRQ-GHQDQCIRI 656
+T+ K +LI TP ++ +K D+ K++ VLDE+D + + Q C+ +
Sbjct: 250 KTADFSKLWCDVLISTPMRL-KRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCV-V 307
Query: 657 HKCLPSTCQMMFFSATYGTAVMQFAEIIV 743
C + FSAT +V + A I+
Sbjct: 308 KACSNPSIIRSLFSATLPDSVEELARSIM 336
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 32 ELVDPPGCRLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEALH-LKPNLLKGVYAM 208
E+V+ P L ++ R L + I + + PL S + + + +L+ + +
Sbjct: 100 EIVENPKKELNRQMERDALSRKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAEL 159
Query: 209 GFNAPSKIQETALP 250
GF P+ IQ A+P
Sbjct: 160 GFKEPTPIQRQAIP 173
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 31.5 bits (68), Expect = 0.89
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 501 NHSHILIGTPGKMFDWGVKFGMFDMGKIKVFVLDEADVMINR 626
N +++GTPG++ ++ G G I VLDEAD M +R
Sbjct: 238 NAIDMVVGTPGRILQH-IEEGNMVYGDIAYLVLDEADTMFDR 278
>At3g60040.1 68416.m06705 F-box family protein contains a novel
domain with similarity to F-box domain;
Length = 838
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +2
Query: 80 QGLVESKLDIEIQRK----DPNSPLYSVKTFEALHLKPNLLKGVYA 205
+ LVE+KLD+ ++RK D + ++ ++LHL P+ + +Y+
Sbjct: 494 ESLVEAKLDLGLERKVLRMDVTDLIIGIRNVQSLHLSPDSVHVIYS 539
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRV---------DSNKNYPQVLCLSPTYELAIQ 408
++ I QSG+GKT A+++ ++ R+ S+ P+V+ L PT ELA Q
Sbjct: 412 KSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQ 466
>At5g22710.1 68418.m02653 expressed protein
Length = 262
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 658 INAYHQHVR*CFSLQHMVLQSCNLLR*LFLIHYNQLLREEESLG*HKTILCKVPKCRRPI 837
+N+Y +++ + M+L+SC L+ LFLI+ + + + + VP+C RP
Sbjct: 130 VNSYEYYLK----MLPMLLKSCPNLKSLFLIYMQEPMEYKNE---QTMLSLPVPECLRPS 182
Query: 838 LE 843
LE
Sbjct: 183 LE 184
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Frame = +1
Query: 274 NMIAQSQSGTGKTAAFVLAML-------SRVDSNKNY---PQVLCLSPTYELAIQ 408
+++ ++++G GKT AFVL +L ++ Y P VL L PT ELA Q
Sbjct: 135 DLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQ 189
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 28.3 bits (60), Expect = 8.3
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNK-----NYPQVLCLSPTYELAIQTGEVAAKMA 435
++ I +++G+GKT FVL ML + + P L ++PT EL Q K +
Sbjct: 434 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFS 493
Query: 436 KFCPEIKLK-YAVRG-----EELPRGSKITV 510
K I + Y G EL RG++I V
Sbjct: 494 KALGIICVPVYGGSGVAQQISELKRGTEIVV 524
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +1
Query: 271 QNMIAQSQSGTGKTAAFVLAMLSRVDSNK-----NYPQVLCLSPTYELAIQTGEVAAKMA 435
++ I +++G+GKT FVL ML + + P L ++PT EL Q K +
Sbjct: 567 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFS 626
Query: 436 K 438
K
Sbjct: 627 K 627
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,800,246
Number of Sequences: 28952
Number of extensions: 462932
Number of successful extensions: 1237
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2392460208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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