Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0795
         (972 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.59 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   2.4  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   5.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   5.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   5.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.3  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   7.3  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   9.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   9.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   9.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   9.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   9.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   9.6  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   9.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   9.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   9.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 0.59
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 TSLPRRVKTSVPWHWRERLRLQGLHFPSC 303
           T LP+ + TS+     E + L  LH P+C
Sbjct: 377 TELPKHLPTSLTKSKMEVMELSDLHHPNC 405


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 838 LLHFISTSSLAVWFRPNNSHYRRPLFIINFPMVQFWD 948
           L HFI +   A+W  P N   R P+    + +  F D
Sbjct: 56  LSHFIESGITAIWLSPIN---RSPMVDFGYDISDFKD 89


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 128 ISNVSNLQNHHNDNASL 78
           ISN+SN  N++N N  L
Sbjct: 90  ISNISNYNNNNNYNKKL 106


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 128 ISNVSNLQNHHNDNASL 78
           ISN+SN  N++N N  L
Sbjct: 328 ISNISNYNNNNNYNKKL 344


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 596 LEVFPDWLPKVSICLTTSMPSTTFPKTTCRHPAR 495
           L V+P++   V +C   S   ++  KT C+  A+
Sbjct: 643 LNVYPEFQENVQLCSEISESYSSNNKTLCKCDAQ 676


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +2

Query: 269 GFGYKGSIFHRVIPN 313
           GFGY+ ++ ++V+P+
Sbjct: 389 GFGYESNVKYQVVPS 403


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +2

Query: 269 GFGYKGSIFHRVIPN 313
           GFGY+ ++ ++V+P+
Sbjct: 389 GFGYESNVKYQVVPS 403


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +2

Query: 269 GFGYKGSIFHRVIPN 313
           GFGY+ ++ ++V+P+
Sbjct: 15  GFGYESNVKYQVVPS 29


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +1

Query: 442 CRC*Y*WFPVLHHHCQDLLAGWRHVVFGNVVEGMEVVKQIETFGSQS 582
           C+    WFP    HC      W +   GN V   ++V   ET G  S
Sbjct: 111 CKMDVAWFPFDDQHCDMKFGSWTY--DGNQV---DLVLSSETGGDLS 152


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +1

Query: 442 CRC*Y*WFPVLHHHCQDLLAGWRHVVFGNVVEGMEVVKQIETFGSQS 582
           C+    WFP    HC      W +   GN V   ++V   ET G  S
Sbjct: 111 CKIDIAWFPFDDQHCDMKFGSWTY--DGNQV---DLVLSSETGGDLS 152


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +1

Query: 442 CRC*Y*WFPVLHHHCQDLLAGWRHVVFGNVVEGMEVVKQIETFGSQS 582
           C+    WFP    HC      W +   GN V   ++V   ET G  S
Sbjct: 111 CKIDITWFPFDDQHCDMKFGSWTY--DGNQV---DLVLSSETGGDLS 152


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +1

Query: 442 CRC*Y*WFPVLHHHCQDLLAGWRHVVFGNVVEGMEVVKQIETFGSQS 582
           C+    WFP    HC      W +   GN V   ++V   ET G  S
Sbjct: 111 CKIDIAWFPFDDQHCDMKFGSWTY--DGNQV---DLVLSSETGGDLS 152


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +1

Query: 442 CRC*Y*WFPVLHHHCQDLLAGWRHVVFGNVVEGMEVVKQIETFGSQS 582
           C+    WFP    HC      W +   GN V   ++V   ET G  S
Sbjct: 111 CKMDIAWFPFDDQHCDMKFGSWTY--DGNQV---DLVLSSETGGDLS 152


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +1

Query: 442 CRC*Y*WFPVLHHHCQDLLAGWRHVVFGNVVEGMEVVKQIETFGSQS 582
           C+    WFP    HC      W +   GN V   ++V   ET G  S
Sbjct: 111 CKIDITWFPFDDQHCDMKFGSWTY--DGNQV---DLVLSSETGGDLS 152


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 128 ISNVSNLQNHHNDNASL 78
           ISN+SN  N +N N  L
Sbjct: 90  ISNISNYNNDNNYNKKL 106


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +1

Query: 442 CRC*Y*WFPVLHHHCQDLLAGWRHVVFGNVVEGMEVVKQIETFGSQS 582
           C+    WFP    HC      W +   GN V   ++V   ET G  S
Sbjct: 179 CKIDITWFPFDDQHCDMKFGSWTY--DGNQV---DLVLSSETGGDLS 220


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +1

Query: 442 CRC*Y*WFPVLHHHCQDLLAGWRHVVFGNVVEGMEVVKQIETFGSQS 582
           C+    WFP    HC      W +   GN V   ++V   ET G  S
Sbjct: 179 CKIDITWFPFDDQHCDMKFGSWTY--DGNQV---DLVLSSETGGDLS 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 284,488
Number of Sequences: 438
Number of extensions: 6915
Number of successful extensions: 28
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32048835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)