Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0794
         (1016 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3PSR8 Cluster: Putative uncharacterized protein; n=18;...    38   0.41 
UniRef50_Q54VH3 Cluster: Putative uncharacterized protein; n=1; ...    36   1.3  
UniRef50_Q5LPL6 Cluster: Dipeptide ABC transporter, ATP-binding ...    35   2.9  

>UniRef50_A3PSR8 Cluster: Putative uncharacterized protein; n=18;
           Mycobacterium|Rep: Putative uncharacterized protein -
           Mycobacterium sp. (strain JLS)
          Length = 249

 Score = 37.9 bits (84), Expect = 0.41
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = -3

Query: 273 AHXPRDXTPRVASMSTRFYRTRVRLRTVIATNTNTKCNHATNTSFINYYKLGTDNNRCVA 94
           A  P   T  +    TR  RT V+L  VIA   + KC+ A+N++F++ Y    D +   A
Sbjct: 57  AQTPVQRTITIGDAGTRGLRTYVQLFVVIAAANDAKCDVASNSTFVHAYGFAEDIDASHA 116

Query: 93  L 91
           L
Sbjct: 117 L 117


>UniRef50_Q54VH3 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1071

 Score = 36.3 bits (80), Expect = 1.3
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -3

Query: 276 PAHXPRDXTPRVASMSTRFYRTRVRLRTVIATNTNTKCNHATNTSFINYYKLGTDNN 106
           P+H   D  P ++       +T +   +V+ TNTNT  N  TNT+      +  +NN
Sbjct: 198 PSHSSNDEPPIISKTQNENNKTHIYDESVVNTNTNTNTNTNTNTNNNTNNNINNNNN 254


>UniRef50_Q5LPL6 Cluster: Dipeptide ABC transporter, ATP-binding
           protein; n=2; Rhodobacteraceae|Rep: Dipeptide ABC
           transporter, ATP-binding protein - Silicibacter pomeroyi
          Length = 324

 Score = 35.1 bits (77), Expect = 2.9
 Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 34  ELVDPPGCXFLFVSHYHGV---QCDATIVVSAQFVVINKGSVRRV 159
           EL D  GC  LF+SH+ GV    CD  +V+ A   VI  GSVR V
Sbjct: 198 ELQDDIGCSILFISHHLGVIAELCDEVVVMYAG-EVIEAGSVRDV 241


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,108,101
Number of Sequences: 1657284
Number of extensions: 10129389
Number of successful extensions: 30050
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29873
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 96755564499
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)