Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0794
         (1016 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    27   3.2  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   9.8  

>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 19  WAAALELVDPPGCXFLFVSHYH 84
           WA    +V   GC  LF +HYH
Sbjct: 816 WAITEHIVTQIGCFCLFATHYH 837


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 51  GLXVPVRFALSRSSVRRNDCCQCPVC 128
           GL +P+    +   + R+  C CP+C
Sbjct: 249 GLCLPISVFNTHRCIERSTDCNCPIC 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,248
Number of Sequences: 5004
Number of extensions: 35308
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)