Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0794
         (1016 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1027 - 29826076-29826189,29827304-29827476,29827659-29827710     29   4.5  
01_06_1620 + 38697960-38698131,38698532-38700732                       29   5.9  

>03_05_1027 - 29826076-29826189,29827304-29827476,29827659-29827710
          Length = 112

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 317 GIERGW--ECAPPADTQHTXHATRRRESPACRRGSTALESACELSSQQTQTQ 168
           G+ER W  E A P ++ H         + AC + + + E  CE   ++ Q Q
Sbjct: 2   GLERTWCLEIAQPEESDHHIKLDISIYTKACMKDNYSTEKQCEKEEEEEQKQ 53


>01_06_1620 + 38697960-38698131,38698532-38700732
          Length = 790

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +1

Query: 415 DLQQKWVPLVYGPVVGRFLERGXLXAQ--WKFRXRPSPNCKELQIIPEHAAAYALLXN 582
           D    W+P   G  + R  + G +     WK R  P+P    +Q+ P  A  Y LL N
Sbjct: 158 DFTDTWLP---GNKLSRNKKTGVIKRMISWKDRADPAPGMFSIQLDPSGATQYILLWN 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,960,108
Number of Sequences: 37544
Number of extensions: 321147
Number of successful extensions: 977
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2998973440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)