Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0794
         (1016 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    26   0.47 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   5.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.7  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 0.47
 Identities = 29/119 (24%), Positives = 38/119 (31%)
 Frame = -3

Query: 369 ERTERRKIEAEAGGTAARNRERLGVRAAX*HPAHXPRDXTPRVASMSTRFYRTRVRLRTV 190
           ERT R++            +     R          RD T R  S   +   +       
Sbjct: 265 ERTSRKRYSCSREREQKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLSN--KT 322

Query: 189 IATNTNTKCNHATNTSFINYYKLGTDNNRCVALNSVIMRNEQEPAARGIH*F*SGRPPR 13
           I  N N K N+  N    N Y     NN C  L   I+  EQ P    +  +    PPR
Sbjct: 323 IHNNNNYKYNYNNNNYNNNNYN-NNYNNNCKKLYYNIINIEQIPVPVPVPIYCGNFPPR 380


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 112 QQSLRRTELRDNAKRT 65
           QQ LRR ++R N +RT
Sbjct: 168 QQLLRRAQIRRNERRT 183


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 16  RWAAALELVDPPGC 57
           RW    E VDP GC
Sbjct: 394 RWFTYQETVDPAGC 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,449
Number of Sequences: 438
Number of extensions: 2797
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33862920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)