Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0793
(981 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702... 95 6e-20
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 93 2e-19
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999... 56 6e-08
01_04_0053 - 15444421-15444747,15444905-15445116,15445198-154453... 53 4e-07
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 40 0.003
12_01_0727 + 6446283-6449300 32 0.61
10_08_1002 + 22160109-22160264,22160374-22160484,22160612-221606... 31 1.1
02_05_0599 - 30251708-30251815,30251864-30251984,30252068-302522... 30 2.5
12_01_0731 - 6516894-6517473,6517485-6519574 29 4.3
08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626 29 7.5
>12_02_1133 -
26368323-26369457,26369556-26369635,26370145-26370201,
26370508-26370601,26371006-26371092,26371179-26371268,
26371396-26371649
Length = 598
Score = 95.5 bits (227), Expect = 6e-20
Identities = 51/133 (38%), Positives = 80/133 (60%), Gaps = 6/133 (4%)
Frame = +3
Query: 420 STKTPVEPWSNS*RTAQP*ERNILRLASALNELQAKLGA----AVTPYERNLELWKQLWR 587
S + P P NS T + + N R A+L +TP+E+N+++W+QLWR
Sbjct: 109 SLRVPRRPPWNSRMTVEELDENERRAFLVWRRNLARLEENDKLVLTPFEKNIDIWRQLWR 168
Query: 588 TLEKSDIVLILLDARNPLLFRCVDLEKYAKE--QKCKSILLLNKADLTSEYERKCWG*IF 761
LE+SD++++++DAR+PL +RC DLE YAKE + ++++L+NKADL RK W F
Sbjct: 169 VLERSDLLVMVVDARDPLFYRCPDLEVYAKEIDEHKRTMILVNKADLLPMNIRKKWADYF 228
Query: 762 HKENIRIVFFSGR 800
+I VF+S +
Sbjct: 229 KAHDILYVFWSAK 241
Score = 41.5 bits (93), Expect = 0.001
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = +1
Query: 412 LTVPRRPQWNPGVTAEEQLNRERETFLDWRRH 507
L VPRRP WN +T EE ER FL WRR+
Sbjct: 110 LRVPRRPPWNSRMTVEELDENERRAFLVWRRN 141
>03_05_0491 -
24868261-24869383,24869482-24869561,24870193-24870249,
24870567-24870660,24871013-24871099,24871188-24871347,
24871440-24871674
Length = 611
Score = 93.5 bits (222), Expect = 2e-19
Identities = 43/110 (39%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = +3
Query: 477 ERNILRLASALNELQAKLGAAVTPYERNLELWKQLWRTLEKSDIVLILLDARNPLLFRCV 656
+R L L L+ +TP+E+N+++W+QLWR LE+SD++++++DAR+PL +RC
Sbjct: 149 KRAFLEWRRNLARLEENEKLVLTPFEKNIDIWRQLWRVLERSDLLVMVVDARDPLFYRCP 208
Query: 657 DLEKYAKE--QKCKSILLLNKADLTSEYERKCWG*IFHKENIRIVFFSGR 800
DLE YA+E + +++LL+NKADL R+ W F + +I +F+S +
Sbjct: 209 DLEVYAQEIDEHKRTLLLVNKADLLPLNVRQRWAEYFKQHDILYLFWSAK 258
Score = 42.3 bits (95), Expect = 6e-04
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 412 LTVPRRPQWNPGVTAEEQLNRERETFLDWRRH 507
L VPRRP W P +T EE E+ FL+WRR+
Sbjct: 127 LKVPRRPPWTPQMTVEELDANEKRAFLEWRRN 158
>03_02_1011 +
13198641-13198899,13199471-13199604,13199805-13199934,
13200290-13200450,13200587-13200688,13200786-13200890,
13200965-13201093,13201180-13201320,13201855-13201955,
13202300-13202357,13202656-13202943
Length = 535
Score = 55.6 bits (128), Expect = 6e-08
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +3
Query: 567 LWKQLWRTLEKSDIVLILLDARNPLLFRCVDLEKYAKEQ-KCKS-ILLLNKADLTSEYER 740
+W +L++ ++ SD+V+ +LDAR+P+ RC LEK+ KE K K + LLNK DL +
Sbjct: 212 IWGELYKVIDSSDVVVQVLDARDPMGTRCYHLEKHLKENAKHKHLVFLLNKCDLVPAWAT 271
Query: 741 KCW 749
K W
Sbjct: 272 KGW 274
>01_04_0053 -
15444421-15444747,15444905-15445116,15445198-15445377,
15445572-15445836,15446308-15446522,15446611-15446784,
15446872-15447010,15447523-15447786
Length = 591
Score = 52.8 bits (121), Expect = 4e-07
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Frame = +3
Query: 570 WKQLWRTLEKSDIVLILLDARNPLLFRCVDLEKYAK--EQKCKSILLLNKADLTSEYERK 743
+K+L + +E SD++L +LDAR+PL RC+D+EK + + + +LLLNK DL + +
Sbjct: 142 YKELVKVIEASDVILEVLDARDPLGTRCIDMEKMVRKADPSKRIVLLLNKIDLVPKESVE 201
Query: 744 CW 749
W
Sbjct: 202 KW 203
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 39.9 bits (89), Expect = 0.003
Identities = 20/76 (26%), Positives = 41/76 (53%)
Frame = +3
Query: 573 KQLWRTLEKSDIVLILLDARNPLLFRCVDLEKYAKEQKCKSILLLNKADLTSEYERKCWG 752
K+L L+ D+V+ + DAR PL ++ + + K I+++N+ D+ S +R W
Sbjct: 295 KELKEQLKLMDVVIEVRDARIPLATSHPKMDAWLGNR--KRIIVMNREDMVSNEDRNAWA 352
Query: 753 *IFHKENIRIVFFSGR 800
F + ++V+ +G+
Sbjct: 353 SYFANQGTKVVYSNGQ 368
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 32.3 bits (70), Expect = 0.61
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = -1
Query: 567 VPSSSHKV---SLLHQA*LE-VHSMPTPI*ECFSLTVELFFSCYSRVPLGSS-WNSERLI 403
+PSS K+ SLL + LE V SMP+ I SLT+ FFSC P+ +S N +L
Sbjct: 367 LPSSIGKLKSLSLLEVSGLELVGSMPSWISNLTSLTILKFFSCGLSGPIPASIGNLTKLT 426
Query: 402 KIRL*CYNGYFT 367
K+ L YN +F+
Sbjct: 427 KLAL--YNCHFS 436
>10_08_1002 +
22160109-22160264,22160374-22160484,22160612-22160689,
22160774-22160921,22161007-22161077,22161430-22161526,
22161603-22161790,22161960-22162223
Length = 370
Score = 31.5 bits (68), Expect = 1.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 603 DIVLILLDARNPLLFRCVDLEKYAKEQKCKSILLLNKADLTSEYERKCW 749
D+VL + DAR P L + + E + +++LNKADL + + W
Sbjct: 43 DLVLEVRDARVPAASAFAPLRRRSPEPDRRRLVVLNKADLADPSQTEKW 91
>02_05_0599 -
30251708-30251815,30251864-30251984,30252068-30252215,
30252303-30252480,30252587-30252625,30252704-30252799,
30252879-30253030,30253336-30253722,30253836-30253940,
30254083-30254098
Length = 449
Score = 30.3 bits (65), Expect = 2.5
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = -1
Query: 771 SPYEIFSPNTFFHIHL*DQLCSAIIYFCIFVLLHTF--LDPHT*IIRD-SLHLTISIQYQ 601
+PYE F+ T + ++ ++CS + +F + L L PHT RD + L+ I+Y
Sbjct: 166 TPYEAFNSKTISYKYMVQEMCSKMQFFMLSFRLEILRELLPHTDQKRDKASFLSEVIEYI 225
Query: 600 IFLKSSI 580
FL+ +
Sbjct: 226 RFLQEKV 232
>12_01_0731 - 6516894-6517473,6517485-6519574
Length = 889
Score = 29.5 bits (63), Expect = 4.3
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = -1
Query: 588 SSITASKVPSSSHKVSLLHQA*LEVH-SMPTPI*ECFSLTVELFFSCYSRVPLGSS-WNS 415
S + S + S +SLL + LE+ SMP+ I SL V FFSC P+ +S N
Sbjct: 371 SGVLPSSI-SQLKSLSLLEVSGLELAGSMPSWISNLTSLNVLKFFSCGLSGPIPASIGNL 429
Query: 414 ERLIKIRL*CYNGYFT 367
+L K+ L YN +F+
Sbjct: 430 TKLTKLAL--YNCHFS 443
>08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626
Length = 369
Score = 28.7 bits (61), Expect = 7.5
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -1
Query: 258 LGFKRPQSYPSFTSVVWSMVI-SSTCFLLRFLENLSLMRALPRDSLFFLPIILTYTTKQG 82
LGF R YPS S V+S+ CF + +P S LP +L G
Sbjct: 183 LGFTRWVLYPSILSRVYSVFDWLQPCFDEVPSNIFTGQSQVPTHSGIALPAVLILRNCAG 242
Query: 81 EIQLPSCR 58
E+ P+CR
Sbjct: 243 EVIFPACR 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,481,406
Number of Sequences: 37544
Number of extensions: 536400
Number of successful extensions: 1371
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2858396560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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