Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0793
         (981 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    25   1.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   2.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   4.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   7.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   9.7  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 10  RWRXALELVDPPGCRNSARGKLYL 81
           RW    E VDP GC N+   K YL
Sbjct: 394 RWFTYQETVDPAGC-NAGPAKYYL 416


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 681 VLLHTFLDPHT*IIRDSLHLTISIQYQIFLKSSITASKVPSSSHKVSLLHQ 529
           V+  T+ +P   I+  +  LTI I  QI   S  +  K   +    S++HQ
Sbjct: 266 VVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQ 316


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 71  FPRAEFLQPGGSTSSR 24
           + + EFL PGGS   R
Sbjct: 65  YAKCEFLNPGGSVKDR 80


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 781 IRMFSL*NIQPQHFLSYSLVRSALFSNNIL 692
           ++  SL NIQ +HF      +  +F NNIL
Sbjct: 254 LQSLSLTNIQLEHFEMKIKRKHNVFVNNIL 283


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +3

Query: 600 SDIVLILLDARNPLLFRCVDLEKYAKEQKCKSILLLNKAD 719
           +DIV++++ A + +  + +   + AK+ K   I+ +NK D
Sbjct: 217 TDIVVLVVAADDGVKEQTLQSIEMAKDAKVPIIVAINKID 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,914
Number of Sequences: 438
Number of extensions: 6121
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32411652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)