Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0792
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.8  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/54 (18%), Positives = 22/54 (40%)
 Frame = -3

Query: 576 HTWRMPTLTFVPACRATSH*VHTEFSEIYSPVAVRIECAEYVFCELTSVTVREK 415
           HT+     +    C+   + ++      Y P+ V I+    +FC    + + E+
Sbjct: 184 HTYSETGPSHCVVCQNFFYQIYATLGSFYIPLFVMIQVYYKIFCAARRIVLEER 237


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 564 FSMYDLDGNGYISRQEM 614
           FS YD + NG + R+E+
Sbjct: 242 FSHYDRNNNGNLEREEL 258


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 609 PALRCIRFHLSHTWRMPTLTFVPAC 535
           P++ CI F+      +P  T+ P C
Sbjct: 135 PSVECIVFNSGTILCVPFTTYTPVC 159


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 521 TKCTRNSLKSIVPSPFASNVRN 456
           + CTR S  + VPS    NV N
Sbjct: 14  SSCTRPSRGNAVPSSQRGNVHN 35


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 521 TKCTRNSLKSIVPSPFASNVRN 456
           + CTR S  + VPS    NV N
Sbjct: 14  SSCTRPSRGNAVPSSQRGNVHN 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,688
Number of Sequences: 438
Number of extensions: 5565
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)