Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0791
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    29   0.70 
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    28   1.2  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   3.7  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   6.5  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   8.6  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 23/79 (29%), Positives = 35/79 (44%)
 Frame = -2

Query: 654 CTQLPCELSCKN*RRISSLNGGSVKFSLGTARFFKRFFDFVKSRLEKCAHKHVLNHVAYV 475
           CT +     C N  +I S  G S + S+   R FK  F  V    EK A   +  H++Y+
Sbjct: 695 CTGIVLSFCCDNLAKIGS--GQSTRVSV-LLRLFKLAFMTVNVFPEKNAEV-LRPHISYI 750

Query: 474 LEDKPDLLCQPSLPIVYIY 418
           +    +L      P+ Y+Y
Sbjct: 751 ISTSLELTTDAVEPLNYVY 769


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = -2

Query: 627  CKN*RRISSLNGGSVKFSLGTARFFKRFFDFVKSRLEKCAHKHVLNHVAYVLEDKPDLLC 448
            CK    I+ ++  + K+S G    F  +   ++ R E C H  +  HV Y       L  
Sbjct: 1023 CKKNTHITVMSEETWKYSFGKYLEFMFYNSQIRDRFEFCDHSVMAQHVHYFGYCNMALRF 1082

Query: 447  QPSLPIVYIY*HPEETLR 394
            Q  L  ++    P  TLR
Sbjct: 1083 QRDLIEIFELFVPSVTLR 1100


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 280 PVLFKFFAPFANFLTCLILIVLVKFVVSKKDIL 378
           P  F F+     F+T + +I L+ FV S  ++L
Sbjct: 522 PTNFSFYRDSFRFITAMFIIALIGFVFSSINLL 554


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 250 IVVIVVEKLTPVLFKFFAPFANFLT--CLILIVLVKFV 357
           I++ V+E ++ +L   F PF  F    C+ L+ L + V
Sbjct: 498 ILLFVIEIISFILLAVFRPFVGFKNSFCVFLVALTRVV 535


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 356 TNFTSTMSIRHVKKFAK 306
           TNF S  S+RH K F+K
Sbjct: 617 TNFGSNNSLRHAKSFSK 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,779
Number of Sequences: 5004
Number of extensions: 62261
Number of successful extensions: 200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)