Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0791
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0360 - 2742955-2743072,2743451-2743597,2743682-2743773,274...    30   2.2  
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92...    29   5.2  
12_01_0387 - 3028922-3029689,3032116-3032832                           28   6.8  

>11_01_0360 -
           2742955-2743072,2743451-2743597,2743682-2743773,
           2744408-2744507,2744590-2744790,2745254-2745459,
           2745619-2746045,2746172-2746411,2746514-2746719,
           2747081-2747176,2747348-2747521
          Length = 668

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = -3

Query: 719 IV*IFIHQKNFNPVKNVQNGKYVPNYLAS*VAKIEEEFHLSMVAVSSSV 573
           IV  F   KNF   + V N  +V N LA    KIEEEF   M   S  +
Sbjct: 116 IVRFFSTNKNFKSSEGVLN--HVNNLLAKSALKIEEEFRQLMTTYSKPI 162


>02_01_0125 +
           920128-920392,920491-921839,921921-922084,922340-922370,
           922534-922565,922730-923060,923210-923713
          Length = 891

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 673 MYKMENMYPITLRVELQKLKKNFISQWWQCQVQFGYS 563
           MY M+ +  +   +   K+K N IS+W +   ++ YS
Sbjct: 273 MYGMQGVLTLRPHIPESKMKSNLISKWSRLSKKYSYS 309


>12_01_0387 - 3028922-3029689,3032116-3032832
          Length = 494

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 317 KFAKGAKNLNNTGVSFSTTITTIYKQKQDQTGGVN 213
           ++ K A+ L +  VS S    T  K+K+D  GGV+
Sbjct: 164 RYLKAAQELLDEAVSVSKGAATAVKKKEDSEGGVS 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,424,075
Number of Sequences: 37544
Number of extensions: 317461
Number of successful extensions: 864
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)