Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0791
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40986| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_611| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.0  

>SB_40986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -2

Query: 279 SQFLNNNNYNLQTKTRP-----NRRSKFLNSKY*N*HEKKNTLQNHFVNKVFSRK 130
           S+++NNNN N+     P        S+++N+   N H  KNT  N+  N  F +K
Sbjct: 9   SRYVNNNNNNIHHNKTPMTTTTTALSRYVNNNNNNIHHNKNTDDNN--NNSFVKK 61


>SB_611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/85 (22%), Positives = 38/85 (44%)
 Frame = +1

Query: 334 LIVLVKFVVSKKDILLKNGFSQGFLWMSIDVNNG*RWLAKKIWLIFKYICYMI*NMFVST 513
           +++L  +V   K I   +  S   ++M   V +G  WL +  W +  Y  +++  M +  
Sbjct: 105 MLILFPYVFLFKVIKTTHHESNETIFMCQPVGSGYDWLDRLYWTVELYYTFLL-PMIIMI 163

Query: 514 FLKTRLYKIKEALKKTSCTQTELDT 588
           F  T L +    +KK    Q  +++
Sbjct: 164 FCYTSLVRKVLRMKKVGQAQPSVNS 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,150,941
Number of Sequences: 59808
Number of extensions: 416020
Number of successful extensions: 1032
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)