Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0791
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   3.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   7.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.2  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 267 NNNNYNLQTKTRPNRRSKFLNSKY*N*HEKKNTLQN 160
           NN N N+Q     N  ++  N K  N + +KN  QN
Sbjct: 417 NNQNDNIQNTNNQNDNNQKNNKK--NANNQKNNNQN 450


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 409 WMSIDVNNG*RWLAKKIWLIFKYICYMI 492
           W++I+      WL +  W +FK + +M+
Sbjct: 311 WVAINELQDSFWLEQYSWALFKAMSHML 338


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 409 WMSIDVNNG*RWLAKKIWLIFKYICYMI 492
           W++I+      WL +  W +FK + +M+
Sbjct: 279 WVAINELQDSFWLEQYSWALFKAMSHML 306


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 84  MAF*FFNIAYKFTLIFFEK 140
           + F FFN+AY  T +F E+
Sbjct: 425 IVFAFFNLAYWSTYLFREE 443


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 84  MAF*FFNIAYKFTLIFFEK 140
           + F FFN+AY  T +F E+
Sbjct: 425 IVFAFFNLAYWSTYLFREE 443


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 469 FKYICYMI*NMFVSTFLKTRLYKIKEALK 555
           F++ C M   + V T+L++ L K KE  K
Sbjct: 339 FEHPCVMDCKVGVRTYLESELAKAKERPK 367


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 469 FKYICYMI*NMFVSTFLKTRLYKIKEALK 555
           F++ C M   + V T+L++ L K KE  K
Sbjct: 254 FEHPCVMDCKVGVRTYLESELAKAKERPK 282


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 469 FKYICYMI*NMFVSTFLKTRLYKIKEALK 555
           F++ C M   + V T+L++ L K KE  K
Sbjct: 573 FEHPCVMDCKVGVRTYLESELAKAKERPK 601


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 78  FLNNSMCYSS 49
           FLNNSMC S+
Sbjct: 628 FLNNSMCTST 637


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,943
Number of Sequences: 438
Number of extensions: 4111
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)