Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0791
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24480.1 68418.m02885 hypothetical protein similar to unknown...    29   2.5  
At1g30640.1 68414.m03747 protein kinase, putative contains prote...    29   4.3  
At5g49920.1 68418.m06181 octicosapeptide/Phox/Bem1p (PB1) domain...    28   5.7  
At4g36590.1 68417.m05194 MADS-box protein (AGL40) contains Pfam ...    28   7.5  
At4g31980.1 68417.m04547 expressed protein contains Pfam profile...    28   7.5  
At4g00910.1 68417.m00124 expressed protein contains Pfam profile...    28   7.5  
At2g26250.1 68415.m03151 beta-ketoacyl-CoA synthase family (FIDD...    27   9.9  

>At5g24480.1 68418.m02885 hypothetical protein similar to unknown
           protein (gb|AAD32930.1)
          Length = 350

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 452 FANHLYPLFTSIDIQRKPCEKPFFSKMS 369
           F+NH YPL  +++ Q KP EK F S  S
Sbjct: 238 FSNHFYPLILNLEPQTKP-EKTFTSHES 264


>At1g30640.1 68414.m03747 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 562

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 708 FYTPKKFQSCKKCTKWKICTQLPCE 634
           FY+ +   +C+K   WK C + P E
Sbjct: 363 FYSEEPLATCRKIVNWKTCLKFPDE 387


>At5g49920.1 68418.m06181 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein   contains Pfam profile
           PF00564: PB1 domain
          Length = 288

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 534 VKSRLEKCAHKHVLNHVAYVLEDKPDLLCQPSLP 433
           +  +L+  +H H  NH AYV      L C+P LP
Sbjct: 201 ISHQLQPHSHYHNHNHNAYVQPPTNYLTCRPRLP 234


>At4g36590.1 68417.m05194 MADS-box protein (AGL40) contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain)
          Length = 248

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -2

Query: 285 HRSQFLNNNNYNLQ-TKTRPNRRSKFLNS 202
           H S  +++ N NLQ  +TRP+R  ++LN+
Sbjct: 79  HNSAIVHHQNNNLQLVETRPDRNIQYLNN 107


>At4g31980.1 68417.m04547 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 680

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
 Frame = +1

Query: 250 IVVIVVEKLTPVLFKFFAPFA-------NFLTCLILIVLVKFVVSKKDILLKNGFSQGFL 408
           I  IVV+ LT  L+K    F        NFL  ++L+       +  D+L+ +G    +L
Sbjct: 539 IPTIVVDDLTESLYKNIIGFEQCRCSNKNFLDYIMLLGCFIKSPTDADLLIHSGIIVNYL 598

Query: 409 WMSIDVNNG*RWLAKKI 459
             S+DV+N    ++K++
Sbjct: 599 GNSVDVSNLFNSISKEV 615


>At4g00910.1 68417.m00124 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 497

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 430 CLHLLTSRGNLAKNRFSVRCLSLIPQTSQV-R*VSGMLKSLQKAQKI 293
           C++  T   +  KN F   C+ L   +S++ R ++ M+K+ +K+ K+
Sbjct: 345 CINYETEAPDQVKNHFGEACMKLSSASSKILRELADMMKNTRKSSKM 391


>At2g26250.1 68415.m03151 beta-ketoacyl-CoA synthase family
           (FIDDLEHEAD) (FDH) identical to GB:AJ010713 (fiddlehead
           protein)
          Length = 550

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 606 SSLNGGSVKFSLGTARFFKRFFDFVKSRLEKCAHKHVLNHVAYV 475
           S  N GS  FS+   R    F   V  +  K  + +++NH  Y+
Sbjct: 22  SGPNAGSPTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHAVYL 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,486,676
Number of Sequences: 28952
Number of extensions: 298755
Number of successful extensions: 837
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)