Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0790
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    28   1.3  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    27   3.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.0  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    26   5.0  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   5.0  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    26   6.7  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   8.8  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    25   8.8  

>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3

Query: 519 WRDVGHLLGVTQDDLNYIMNSLKDDPVDMVLKVFRQNEKATIN 647
           WRD G L+    DD+N ++ ++ D  +   +    +++K  +N
Sbjct: 72  WRDRGFLVEDLSDDVNMVLTAIDDPSLSSEIYKLCKSKKIPVN 114


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 466 GYEVWKTIVKKVGGFQIVG-EMLAIY*VLH 552
           G + W+ ++ K G  +I+G E L IY  LH
Sbjct: 424 GTDGWRNVLTKFGSSKIIGREALMIYRALH 453


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +3

Query: 636  ATINKIVDAFIKLQRYDILLAIGKSTVDYGL 728
            A++ K+++ +++LQR D+L   GK+ + Y L
Sbjct: 2370 ASVEKVLNEYLELQRRDLLQ--GKNVLPYSL 2398


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 25/109 (22%), Positives = 44/109 (40%)
 Frame = +3

Query: 237 LNFRLSFSLVKTNVKMEYLCEHLDETASVDTLQLEEFLREQRAAEINRLNYLSKKVDYLH 416
           L   +  SL   + +++ L  H    AS   L+ +  + E  +   N        +    
Sbjct: 440 LEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGAEIAGLIKSA 499

Query: 417 TDLLYYRNIKSKMGAAWL*SLENHSEESGGFPNCWRDVGHLLGVTQDDL 563
           +   +YR+IK    AA   +LEN       F N   +V    GV++++L
Sbjct: 500 SSFAFYRHIKVGTTAAVSGNLENIKVNRNDFLNALSEVRPAYGVSEEEL 548


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 653 YFIYSSFFILSEYFQYH 603
           +FI S+FF LS Y  YH
Sbjct: 201 FFIISTFFCLSRYHVYH 217


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 665 ECINYFIYSSFFILSEYFQYH 603
           +C+ +F+Y    I+++ FQ+H
Sbjct: 242 KCMEHFLYYGCLIIADIFQFH 262


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = -1

Query: 211 CIKQENTY*HFLSCNSKCTINRNFYEFFILSINLQILNVTK 89
           C+K   +Y  F+    KC++  +F+ +  L+ + ++ N+ +
Sbjct: 12  CLKVRTSYKCFVKYFPKCSVQSSFHSYDELAFSRRLYNLPR 52


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 517 QFGNPPLSSLWFSRLHSQAAPILDLI 440
           +FGNP    +W  +L   A+ I+D+I
Sbjct: 98  RFGNPAFR-IWHEKLRDSASQIMDII 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,457
Number of Sequences: 5004
Number of extensions: 64034
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)