Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0790
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0762 + 6915299-6915532,6916043-6916220,6916490-6916656,691... 31 1.3
11_04_0476 + 18190600-18191259 30 1.7
05_03_0227 + 10655204-10655269,10656333-10656393,10656570-106566... 29 4.0
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794... 29 4.0
03_01_0580 + 4293079-4293582,4293797-4294037,4294982-4295160,429... 28 7.0
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 28 7.0
12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529 28 9.2
05_05_0145 - 22690212-22690472,22690701-22690818,22691125-226912... 28 9.2
05_01_0333 - 2614123-2614202,2614466-2614553,2614644-2614721,261... 28 9.2
>12_01_0762 +
6915299-6915532,6916043-6916220,6916490-6916656,
6916770-6916852,6916940-6917318
Length = 346
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -2
Query: 186 NIFYLVTRNVRLTETFMNFLFYQSIYKF 103
N+FY+VT+ +R+ E F+ F FY Y+F
Sbjct: 271 NLFYIVTKRLRM-EGFLVFDFYDRYYQF 297
>11_04_0476 + 18190600-18191259
Length = 219
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 535 WPTSLQQFGNPPLSSLWFSRLHSQAA 458
WPT +Q G PP + W+ R H +AA
Sbjct: 129 WPTLPRQPGAPPTAKNWWLRAHRRAA 154
>05_03_0227 +
10655204-10655269,10656333-10656393,10656570-10656672,
10656768-10656870,10656951-10657004,10657124-10657186,
10657884-10658105,10658249-10658336,10658561-10658646,
10659003-10659110,10659201-10659245,10659511-10659601,
10659662-10659765
Length = 397
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 400 KLITSILIYCTIEILNLKWVLPGYEVWKTIVKKVGGFQIVGEMLA 534
K ++S++IYCT + ++ + L + W +K G + + LA
Sbjct: 204 KFVSSVIIYCTFSLHDVAY-LETFSFWAVSKRKFRGLNLTSQDLA 247
>01_06_1257 -
35778078-35778299,35778952-35779069,35779294-35779433,
35779763-35779864,35779971-35780051,35780333-35780402,
35781053-35781114,35781789-35782183,35782303-35782386,
35782949-35783041,35783144-35783195,35783310-35783376,
35783492-35783550,35784209-35784256,35784927-35785040,
35785162-35785335,35785417-35785944,35786025-35786094,
35786668-35786711
Length = 840
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 288 YLCEHLDETASVDTLQLEEFLREQRAAEINRLNYLSKKVDYL 413
Y E + E VD L LEE +RE+ +N L+YL +V ++
Sbjct: 359 YFSEEMIE-CQVDQLVLEELVREKFPKLVNHLDYLGVQVAWV 399
>03_01_0580 +
4293079-4293582,4293797-4294037,4294982-4295160,
4295319-4295674,4295761-4296100
Length = 539
Score = 28.3 bits (60), Expect = 7.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 427 CTIEILNLKWVLPGYEVW 480
CT+ + L WV+P Y +W
Sbjct: 255 CTMLVRTLHWVVPSYSIW 272
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 712 VDFPMANRMSYLCSFMNASTILFIVAFSFCLNTFNTISTGSS 587
+D M RMS L + N T++ ++ F F L+ N+ G S
Sbjct: 1312 IDSQMCIRMSALEFYCNRPTLVALIEFGFDLSMVNSAPKGDS 1353
>12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529
Length = 150
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 486 HSEESGGFPNCWRDVGHLLGVTQDDLNYIMNSLKD 590
H+ SG + DVGH NY++ S+KD
Sbjct: 54 HASASGDATEAFEDVGHSTSAISMMNNYLIGSIKD 88
>05_05_0145 -
22690212-22690472,22690701-22690818,22691125-22691261,
22691743-22691844,22691921-22692001,22692325-22692394,
22692628-22692689,22692908-22693320,22693424-22693507,
22694180-22694272,22694376-22694427,22694542-22694608,
22694714-22694772,22694920-22695033,22695174-22695347,
22695444-22695935,22696021-22696090,22696649-22696692
Length = 830
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 288 YLCEHLDETASVDTLQLEEFLREQRAAEINRLNYLSKKVDYL 413
Y E + E+ VD L LEE +RE+ N L+YL +V ++
Sbjct: 331 YFSEEMIES-QVDQLVLEELVREKFPKLANHLDYLGLQVAWV 371
>05_01_0333 -
2614123-2614202,2614466-2614553,2614644-2614721,
2614795-2614887,2614982-2615101,2615685-2615726,
2615822-2616091,2617188-2617339,2617771-2618233
Length = 461
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 258 SLVKTNVKMEYLCEHLDETASVDTLQLEEFLREQRAAEINRLNYLSKKVDYLHTDLLYYR 437
++ K V++ + +HL+ DT+QLEE L ++ N L+ +D + L + R
Sbjct: 355 TIEKLGVRVGDIIQHLNGEWVSDTIQLEEMLLRLSEDHFDKGNGLNSTLD-IKVGLFHIR 413
Query: 438 N 440
N
Sbjct: 414 N 414
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,437,451
Number of Sequences: 37544
Number of extensions: 341580
Number of successful extensions: 800
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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