Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0790
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2424| Best HMM Match : RVT_1 (HMM E-Value=6.2e-18)                  36   0.047
SB_57968| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.082
SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)                   35   0.082
SB_55415| Best HMM Match : Death (HMM E-Value=1.3e-06)                 34   0.11 
SB_58071| Best HMM Match : Death (HMM E-Value=8.4e-12)                 33   0.25 
SB_11166| Best HMM Match : CARD (HMM E-Value=0.001)                    29   3.1  
SB_59480| Best HMM Match : ZU5 (HMM E-Value=2.4e-38)                   29   4.1  
SB_12910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_29188| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_13776| Best HMM Match : Plasmid_killer (HMM E-Value=4)              28   9.4  
SB_6869| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8026e-45)       28   9.4  
SB_39228| Best HMM Match : IBR (HMM E-Value=4.1e-20)                   28   9.4  
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   9.4  

>SB_2424| Best HMM Match : RVT_1 (HMM E-Value=6.2e-18)
          Length = 657

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 22/72 (30%), Positives = 38/72 (52%)
 Frame = +3

Query: 477 LENHSEESGGFPNCWRDVGHLLGVTQDDLNYIMNSLKDDPVDMVLKVFRQNEKATINKIV 656
           L N+S ESG FP+CW++   +  + +  L  I  +L+  PV  +  V +  E+A  N+  
Sbjct: 202 LINNSLESGIFPDCWKEATVVPLLKKQGLESIFKNLR--PVSNLAYVSKLIERAVFNQTD 259

Query: 657 DAFIKLQRYDIL 692
           +  I+   Y +L
Sbjct: 260 NHLIQSALYPLL 271


>SB_57968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 34.7 bits (76), Expect = 0.082
 Identities = 22/72 (30%), Positives = 38/72 (52%)
 Frame = +3

Query: 477 LENHSEESGGFPNCWRDVGHLLGVTQDDLNYIMNSLKDDPVDMVLKVFRQNEKATINKIV 656
           L N+S ESG FP+CW++   +  + +  L  I  +L+  PV  +  V +  E+A  N+  
Sbjct: 142 LINNSLESGIFPDCWKEAIVVPLLKKQGLESIFKNLR--PVSNLAYVSKLIERAVFNQTD 199

Query: 657 DAFIKLQRYDIL 692
           +  I+   Y +L
Sbjct: 200 NHLIQSALYPLL 211


>SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)
          Length = 1486

 Score = 34.7 bits (76), Expect = 0.082
 Identities = 22/72 (30%), Positives = 38/72 (52%)
 Frame = +3

Query: 477 LENHSEESGGFPNCWRDVGHLLGVTQDDLNYIMNSLKDDPVDMVLKVFRQNEKATINKIV 656
           L N+S ESG FP+CW++   +  + +  L  I  +L+  PV  +  V +  E+A  N+  
Sbjct: 524 LINNSLESGIFPDCWKEAIVVPLLKKQGLESIFKNLR--PVSNLAYVSKLIERAVFNQTD 581

Query: 657 DAFIKLQRYDIL 692
           +  I+   Y +L
Sbjct: 582 NHLIQSALYPLL 593


>SB_55415| Best HMM Match : Death (HMM E-Value=1.3e-06)
          Length = 799

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 513 NCWRDVGHLLGVTQDDLNYIMNSLKDDPVDMVLK-VFRQNEKATINKIVDAFIKLQRYDI 689
           NCWR V   L + Q       N +KD+P   +L  V   + + T+  +    + ++R D+
Sbjct: 603 NCWRTVATQLDIPQRVFEQFDNKMKDNPTRQLLHLVHTHDTRLTVEDLKTKLMSIEREDV 662

Query: 690 L 692
           +
Sbjct: 663 V 663


>SB_58071| Best HMM Match : Death (HMM E-Value=8.4e-12)
          Length = 633

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 495 ESGGFPNCWRDVGHLLGVTQDDLNYIMNSLKDDPV-DMVLKVFRQNEKATINKIVDAFIK 671
           + GG P CWRD+  +L +  +   +  +  +  P  DM++ +     + TI+ + D    
Sbjct: 325 QHGGVP-CWRDLAEVLAIPPEAYEHCSSFSETSPTEDMMMFLSATKPQLTISDMKDGLRA 383

Query: 672 LQRYDIL 692
           + R D+L
Sbjct: 384 IGRQDVL 390


>SB_11166| Best HMM Match : CARD (HMM E-Value=0.001)
          Length = 720

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 27/96 (28%), Positives = 51/96 (53%)
 Frame = +3

Query: 414 HTDLLYYRNIKSKMGAAWL*SLENHSEESGGFPNCWRDVGHLLGVTQDDLNYIMNSLKDD 593
           HT+ L  +NI S +    + +L N   E G   N WR V   +G+T ++++ + +S K D
Sbjct: 102 HTETLL-KNIPSSLRDTIVQTL-NIKTELG---NNWRGVAGHMGLTSEEVDRLDDSGKMD 156

Query: 594 PVDMVLKVFRQNEKATINKIVDAFIKLQRYDILLAI 701
              +  ++  +N K  +  IVD   + +R+D++ +I
Sbjct: 157 --SLFAQMVHKNYK--LQDIVDLLKECERHDVVESI 188


>SB_59480| Best HMM Match : ZU5 (HMM E-Value=2.4e-38)
          Length = 903

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = +3

Query: 513 NCWRDVGHLLGVTQDDLNYI---MNSLKDDPVDMVLKVFRQNEK 635
           N W+ VG  LG T+++LN I    + + D+  + VL V+R +++
Sbjct: 702 NDWQAVGKQLGFTEEELNEISENKSGVPDECAEEVLTVWRDSKE 745


>SB_12910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 375 NRLNYLSKKVDYLHTDLLYYRNIKSKMG 458
           NRLN L KK+D+    L+   N K KMG
Sbjct: 7   NRLNSLKKKLDHKVDKLIQAENEKKKMG 34


>SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1444

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/110 (18%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
 Frame = +3

Query: 414  HTDLLY-YRNIKSKMGAAWL*SLENHSEESGGFPNCWRDVGHLLGVTQDDLNYIMNSLKD 590
            H++L++ Y  + ++ G     S+E+H      + +   D+       +D+L     +++ 
Sbjct: 780  HSNLMHQYEAVAAENGKKI--SMEDHVIALDEWRSLLEDLKVKKTSEEDELKSHQEAIQK 837

Query: 591  DPVDMVLKVFRQNEKAT-INKIVDAFIKLQRYDILLAIGKSTVDYGLXIL 737
            +  ++ +++     + T + + ++A+ K Q+YDI+  + + + DY + +L
Sbjct: 838  EKNNLAVELADFKARVTQLERELEAYKKSQKYDIIFLLPEDSKDYNIDLL 887


>SB_29188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 273 NVKMEYLCEHLDETASVDTLQLEEFLREQRAAEINRL 383
           +V +  + E   E +S+D   L E LRE RA EI  L
Sbjct: 417 SVALTSMRERTVEVSSIDITSLNETLREDRAIEITSL 453


>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3038

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +3

Query: 303  LDETASVDTLQLEEFLREQRAAEINRLNYLSKKVDYL 413
            L+ TA+V +++L + +RE+   ++N++NY +  +  L
Sbjct: 1318 LELTAAVISVKLSKIIREELDLKVNKVNYWTDSMSVL 1354


>SB_13776| Best HMM Match : Plasmid_killer (HMM E-Value=4)
          Length = 316

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +3

Query: 303 LDETASVDTLQLEEFLREQRAAEINRLNYLSKKVDYL 413
           L+ TA+V +++L + +RE+   ++N++NY +  +  L
Sbjct: 17  LELTAAVISVKLSKIIREELDLKVNKVNYWTDSMSVL 53


>SB_6869| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8026e-45)
          Length = 811

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +3

Query: 303 LDETASVDTLQLEEFLREQRAAEINRLNYLSKKVDYL 413
           L+ TA+V +++L + +RE+   ++N++NY +  +  L
Sbjct: 228 LELTAAVISVKLSKIIREELDLKVNKVNYWTDSMSVL 264


>SB_39228| Best HMM Match : IBR (HMM E-Value=4.1e-20)
          Length = 303

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 171 VTRNVRLTETFMNFLFYQSIYKFSTLQRC 85
           V +  +L E F+NFLF   I  FS L+ C
Sbjct: 63  VLKGGKLREKFINFLFNDQIKTFSKLRWC 91


>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1478

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
 Frame = -2

Query: 594  GHLLKNSLCNLGHPV*H-------LINGQHLSNNL-ETPHFLHYGFPDFIARQHPF*I*Y 439
            GH +KN  C L   +         L+ G  L NNL E    L++  PD     + F   +
Sbjct: 948  GHRIKNLNCRLIRELKSYNSANRLLLTGTPLQNNLAELWSLLNFLLPDIFDDLNSFQRWF 1007

Query: 438  FYSTINQYGGNQ 403
             +S IN  GGN+
Sbjct: 1008 DFSAINDEGGNE 1019


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,781,134
Number of Sequences: 59808
Number of extensions: 405764
Number of successful extensions: 910
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)