Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0790
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.77 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.77 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.77 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   1.0  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    24   1.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    24   1.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   7.1  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 243 SSKQDFNHVHFVSNRKIHTNIFYLVTRNVRLTET 142
           + KQ + H+   SN  I  +    +TR++RLT T
Sbjct: 102 NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTIT 135


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 243 SSKQDFNHVHFVSNRKIHTNIFYLVTRNVRLTET 142
           + KQ + H+   SN  I  +    +TR++RLT T
Sbjct: 102 NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTIT 135


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 243 SSKQDFNHVHFVSNRKIHTNIFYLVTRNVRLTET 142
           + KQ + H+   SN  I  +    +TR++RLT T
Sbjct: 41  NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTIT 74


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 354 EQRAAEIN-RLNYLSKKVDYLHT 419
           EQ   E+N  LNY++K V Y HT
Sbjct: 50  EQTLNELNFNLNYVNKGVTYKHT 72


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 169 NSKCTINRNFYEFFILSINLQILNVTKMH*NIHNIEYHIY 50
           NSK TI R   E  +L  N   + +  +  N+HN   +I+
Sbjct: 24  NSKKTIMRILKEVCVLQANRACILIKDLFDNVHNHIQNIF 63


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 169 NSKCTINRNFYEFFILSINLQILNVTKMH*NIHNIEYHIY 50
           NSK TI R   E  +L  N   + +  +  N+HN   +I+
Sbjct: 7   NSKKTIMRILKEVCVLQANRACILIKDLFDNVHNHIQNIF 46


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 354 HVKILLIVVYLHLQFH 307
           H +  +++VY HLQ H
Sbjct: 197 HAEYSMLLVYFHLQRH 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,947
Number of Sequences: 438
Number of extensions: 4410
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)