Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0790
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62680.1 68414.m07074 pentatricopeptide (PPR) repeat-containi...    30   1.9  
At2g26790.1 68415.m03213 pentatricopeptide (PPR) repeat-containi...    29   2.5  
At5g51040.1 68418.m06327 expressed protein                             28   5.8  
At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identica...    28   5.8  
At3g01420.1 68416.m00065 pathogen-responsive alpha-dioxygenase, ...    28   5.8  
At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein lo...    28   5.8  
At5g06790.1 68418.m00767 expressed protein similar to unknown pr...    28   7.7  

>At1g62680.1 68414.m07074 pentatricopeptide (PPR) repeat-containing
           protein contains multiple PPR repeats Pfam Profile:
           PF01535
          Length = 542

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 9/28 (32%), Positives = 21/28 (75%)
 Frame = +3

Query: 645 NKIVDAFIKLQRYDILLAIGKSTVDYGL 728
           N+++ A +KL++YD+++++GK     G+
Sbjct: 83  NRLLSAIVKLKKYDVVISLGKKMEVLGI 110


>At2g26790.1 68415.m03213 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 799

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +3

Query: 534 HLLGVTQDDLNYIMNSLKDDPVDMVLKVFRQNEKATINKIVDAFIKLQR 680
           +L  +TQ  L  ++NS +DDP ++ L   RQ ++  ++  V+A+  L R
Sbjct: 50  NLSKLTQHGLQRLLNSTRDDP-NLALSFLRQLKEHGVSPNVNAYATLVR 97


>At5g51040.1 68418.m06327 expressed protein
          Length = 188

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 288 YLCEHLDETASVDTLQLEEFLREQRAAEINRLNYLSKKVDYLHTDLL 428
           + CE+   TAS     ++    E +   INRL Y SK+  +L  DL+
Sbjct: 48  FFCEN---TASAQNFDIDLSNEENKRRTINRLLYRSKQRGFLELDLV 91


>At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identical
           to endo-polygalacturonase [Arabidopsis thaliana]
           GI:2597824
          Length = 431

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 349 KNSSNCSVSTLAVSSRCSHKYSIFTLVLTRLKDNLKFKTRFQSC-SLCIKQENT 191
           KN S  S + +A++  CS KY    +VL    +N+K K    SC +  +K + T
Sbjct: 376 KNISGTSATDVAITLNCSEKYPCQGIVL----ENVKIKGGTASCKNANVKNQGT 425


>At3g01420.1 68416.m00065 pathogen-responsive alpha-dioxygenase,
           putative similar to pathogen-inducible alpha-dioxygenase
           [Nicotiana attenuata] GI:12539609; contains Pfam profile
           PF03098: Animal haem peroxidase
          Length = 639

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
 Frame = +3

Query: 498 SGGFPNCWRDVGHLLGVTQDDLNYIMNSLKDDPVDM----VLKVFRQNEKATINKI--VD 659
           SG   N W  V  L  +   + N + ++LKD+  D+    + +  R    A + KI  +D
Sbjct: 262 SGDIRNSWAGVSALQALFIKEHNAVCDALKDEDDDLEDEDLYRYARLVTSAVVAKIHTID 321

Query: 660 AFIKLQRYDILLAIGKSTVDYGL 728
             ++L + D LLA G     YGL
Sbjct: 322 WTVQLLKTDTLLA-GMRANWYGL 343


>At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein low
           similarity to Rab6 GTPase activating protein, GAPCenA
           [Homo sapiens] GI:12188746; contains Pfam profile
           PF00566: TBC domain
          Length = 882

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 288 YLCEHLDETASVDTLQLEEFLREQRAAEINRLNYLSKKVDYL 413
           Y  E + E+  VD L  EE +RE+    +N L+YL  +V ++
Sbjct: 440 YYTEEMIES-QVDQLVFEELMRERFPKLVNHLDYLGVQVAWI 480


>At5g06790.1 68418.m00767 expressed protein similar to unknown
           protein (emb|CAB67623.1); expression supported by MPSS
          Length = 209

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/64 (31%), Positives = 35/64 (54%)
 Frame = -1

Query: 355 SRKNSSNCSVSTLAVSSRCSHKYSIFTLVLTRLKDNLKFKTRFQSCSLCIKQENTY*HFL 176
           S  +SS CS S+   SS    K  I TL+++++   L+  +R  S  + + ++  Y +FL
Sbjct: 10  SSMSSSQCSSSSSPTSSSMKLKSLIQTLIISQVCRLLREISRVSSILVRVLRKKQY-NFL 68

Query: 175 SCNS 164
           S +S
Sbjct: 69  SVSS 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,925,886
Number of Sequences: 28952
Number of extensions: 303355
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)