BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0790 (757 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g62680.1 68414.m07074 pentatricopeptide (PPR) repeat-containi... 30 1.9 At2g26790.1 68415.m03213 pentatricopeptide (PPR) repeat-containi... 29 2.5 At5g51040.1 68418.m06327 expressed protein 28 5.8 At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identica... 28 5.8 At3g01420.1 68416.m00065 pathogen-responsive alpha-dioxygenase, ... 28 5.8 At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein lo... 28 5.8 At5g06790.1 68418.m00767 expressed protein similar to unknown pr... 28 7.7 >At1g62680.1 68414.m07074 pentatricopeptide (PPR) repeat-containing protein contains multiple PPR repeats Pfam Profile: PF01535 Length = 542 Score = 29.9 bits (64), Expect = 1.9 Identities = 9/28 (32%), Positives = 21/28 (75%) Frame = +3 Query: 645 NKIVDAFIKLQRYDILLAIGKSTVDYGL 728 N+++ A +KL++YD+++++GK G+ Sbjct: 83 NRLLSAIVKLKKYDVVISLGKKMEVLGI 110 >At2g26790.1 68415.m03213 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 799 Score = 29.5 bits (63), Expect = 2.5 Identities = 16/49 (32%), Positives = 29/49 (59%) Frame = +3 Query: 534 HLLGVTQDDLNYIMNSLKDDPVDMVLKVFRQNEKATINKIVDAFIKLQR 680 +L +TQ L ++NS +DDP ++ L RQ ++ ++ V+A+ L R Sbjct: 50 NLSKLTQHGLQRLLNSTRDDP-NLALSFLRQLKEHGVSPNVNAYATLVR 97 >At5g51040.1 68418.m06327 expressed protein Length = 188 Score = 28.3 bits (60), Expect = 5.8 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +3 Query: 288 YLCEHLDETASVDTLQLEEFLREQRAAEINRLNYLSKKVDYLHTDLL 428 + CE+ TAS ++ E + INRL Y SK+ +L DL+ Sbjct: 48 FFCEN---TASAQNFDIDLSNEENKRRTINRLLYRSKQRGFLELDLV 91 >At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identical to endo-polygalacturonase [Arabidopsis thaliana] GI:2597824 Length = 431 Score = 28.3 bits (60), Expect = 5.8 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = -1 Query: 349 KNSSNCSVSTLAVSSRCSHKYSIFTLVLTRLKDNLKFKTRFQSC-SLCIKQENT 191 KN S S + +A++ CS KY +VL +N+K K SC + +K + T Sbjct: 376 KNISGTSATDVAITLNCSEKYPCQGIVL----ENVKIKGGTASCKNANVKNQGT 425 >At3g01420.1 68416.m00065 pathogen-responsive alpha-dioxygenase, putative similar to pathogen-inducible alpha-dioxygenase [Nicotiana attenuata] GI:12539609; contains Pfam profile PF03098: Animal haem peroxidase Length = 639 Score = 28.3 bits (60), Expect = 5.8 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%) Frame = +3 Query: 498 SGGFPNCWRDVGHLLGVTQDDLNYIMNSLKDDPVDM----VLKVFRQNEKATINKI--VD 659 SG N W V L + + N + ++LKD+ D+ + + R A + KI +D Sbjct: 262 SGDIRNSWAGVSALQALFIKEHNAVCDALKDEDDDLEDEDLYRYARLVTSAVVAKIHTID 321 Query: 660 AFIKLQRYDILLAIGKSTVDYGL 728 ++L + D LLA G YGL Sbjct: 322 WTVQLLKTDTLLA-GMRANWYGL 343 >At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein low similarity to Rab6 GTPase activating protein, GAPCenA [Homo sapiens] GI:12188746; contains Pfam profile PF00566: TBC domain Length = 882 Score = 28.3 bits (60), Expect = 5.8 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = +3 Query: 288 YLCEHLDETASVDTLQLEEFLREQRAAEINRLNYLSKKVDYL 413 Y E + E+ VD L EE +RE+ +N L+YL +V ++ Sbjct: 440 YYTEEMIES-QVDQLVFEELMRERFPKLVNHLDYLGVQVAWI 480 >At5g06790.1 68418.m00767 expressed protein similar to unknown protein (emb|CAB67623.1); expression supported by MPSS Length = 209 Score = 27.9 bits (59), Expect = 7.7 Identities = 20/64 (31%), Positives = 35/64 (54%) Frame = -1 Query: 355 SRKNSSNCSVSTLAVSSRCSHKYSIFTLVLTRLKDNLKFKTRFQSCSLCIKQENTY*HFL 176 S +SS CS S+ SS K I TL+++++ L+ +R S + + ++ Y +FL Sbjct: 10 SSMSSSQCSSSSSPTSSSMKLKSLIQTLIISQVCRLLREISRVSSILVRVLRKKQY-NFL 68 Query: 175 SCNS 164 S +S Sbjct: 69 SVSS 72 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,925,886 Number of Sequences: 28952 Number of extensions: 303355 Number of successful extensions: 784 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 771 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 784 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1682736544 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -