Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0789
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 155 8e-39
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 150 2e-37
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 140 3e-34
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 124 2e-29
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 116 3e-27
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 69 9e-13
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 63 5e-11
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 61 2e-10
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 28 1.2
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 28 1.6
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.1
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 4.9
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 4.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.9
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 26 6.5
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 6.5
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 26 6.5
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 25 8.6
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 8.6
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 155 bits (375), Expect = 8e-39
Identities = 71/85 (83%), Positives = 79/85 (92%)
Frame = +3
Query: 3 LNVLRIINEPTAAAIAYGLDKKGTGERNVLIFXLGGGTFDVSILTIEDGIFEVKSTAGDT 182
LNVLRIINEPTAAAIAYGLD+ GE NVLIF LGGGTFDVS+LTIE+GIFEVK+TAGDT
Sbjct: 165 LNVLRIINEPTAAAIAYGLDRSNQGESNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDT 224
Query: 183 HLGGEDFDNRMVNHFVQEFKRKYKR 257
HLGGEDFD+R+VNHF+QEFKRK K+
Sbjct: 225 HLGGEDFDSRLVNHFIQEFKRKNKK 249
Score = 140 bits (339), Expect = 2e-34
Identities = 68/86 (79%), Positives = 77/86 (89%)
Frame = +2
Query: 251 QKDLATNKRALRRLRTACERAKRTLSSSTQASIXIDSLFEGIDFYTSITRARFEELNADL 430
+KD+ N RA+RRLRTACERAKRTLSSS QASI IDSLFEGIDFYTSITRARFEEL ADL
Sbjct: 248 KKDITGNARAVRRLRTACERAKRTLSSSAQASIEIDSLFEGIDFYTSITRARFEELCADL 307
Query: 431 FRSTMEPVEKSLRDAKMDKAQIHDIV 508
FR TMEPVE+ LRD+K+DKA +++IV
Sbjct: 308 FRKTMEPVERVLRDSKVDKASVNEIV 333
Score = 82.2 bits (194), Expect = 7e-17
Identities = 42/76 (55%), Positives = 47/76 (61%)
Frame = +1
Query: 508 MVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXX 687
+VGGSTRIP+VQKL+ DFFNGKE KSINPDE +L GD SE+ QD
Sbjct: 334 LVGGSTRIPRVQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAVLTGDTSEKTQDLLLLD 393
Query: 688 XXXXXXGIETAGSVMT 735
GIETAG VMT
Sbjct: 394 VAPLSMGIETAGGVMT 409
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 150 bits (364), Expect = 2e-37
Identities = 70/85 (82%), Positives = 77/85 (90%)
Frame = +3
Query: 3 LNVLRIINEPTAAAIAYGLDKKGTGERNVLIFXLGGGTFDVSILTIEDGIFEVKSTAGDT 182
LNVLRIINEPTAAAIAYGLD+ E NVLIF LGGGTFDVS+LTIE+GIFEVK+TAGDT
Sbjct: 165 LNVLRIINEPTAAAIAYGLDRSNQHETNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDT 224
Query: 183 HLGGEDFDNRMVNHFVQEFKRKYKR 257
HLGGEDFD+R+VNHF QEFKRK K+
Sbjct: 225 HLGGEDFDSRLVNHFAQEFKRKNKK 249
Score = 139 bits (337), Expect = 3e-34
Identities = 67/86 (77%), Positives = 78/86 (90%)
Frame = +2
Query: 251 QKDLATNKRALRRLRTACERAKRTLSSSTQASIXIDSLFEGIDFYTSITRARFEELNADL 430
+KD+ N RA+RRLRTACERAKRTLSSS QASI IDSL+EGIDFYTSITRARFEEL ADL
Sbjct: 248 KKDITGNARAVRRLRTACERAKRTLSSSAQASIEIDSLYEGIDFYTSITRARFEELCADL 307
Query: 431 FRSTMEPVEKSLRDAKMDKAQIHDIV 508
FR+TMEPVEK LRD+K+DK+ +++IV
Sbjct: 308 FRNTMEPVEKVLRDSKIDKSSVNEIV 333
Score = 81.8 bits (193), Expect = 9e-17
Identities = 42/76 (55%), Positives = 47/76 (61%)
Frame = +1
Query: 508 MVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXX 687
+VGGSTRIP++QKL+ DFFNGKE KSINPDE IL GD SE+ QD
Sbjct: 334 LVGGSTRIPRIQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAILVGDTSEKTQDLLLLD 393
Query: 688 XXXXXXGIETAGSVMT 735
GIETAG VMT
Sbjct: 394 VAPLSLGIETAGGVMT 409
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 140 bits (338), Expect = 3e-34
Identities = 65/84 (77%), Positives = 72/84 (85%)
Frame = +3
Query: 3 LNVLRIINEPTAAAIAYGLDKKGTGERNVLIFXLGGGTFDVSILTIEDGIFEVKSTAGDT 182
LNVLRIINEPTAAAIAYGLD K +NVLIF LGGGTFDVS+L I+ G+FEV +TAGDT
Sbjct: 169 LNVLRIINEPTAAAIAYGLDAKSDKPKNVLIFDLGGGTFDVSLLKIQGGVFEVLATAGDT 228
Query: 183 HLGGEDFDNRMVNHFVQEFKRKYK 254
HLGGEDFDN +V HF+QEFKRK K
Sbjct: 229 HLGGEDFDNALVEHFIQEFKRKQK 252
Score = 112 bits (269), Expect = 6e-26
Identities = 51/84 (60%), Positives = 69/84 (82%)
Frame = +2
Query: 257 DLATNKRALRRLRTACERAKRTLSSSTQASIXIDSLFEGIDFYTSITRARFEELNADLFR 436
D++ + RALRRLR+ACERAKR LSS TQ ++ +DSL GIDF +SITRARFE++NA F+
Sbjct: 254 DISDDPRALRRLRSACERAKRALSSVTQTTVEVDSLSNGIDFSSSITRARFEDINATTFK 313
Query: 437 STMEPVEKSLRDAKMDKAQIHDIV 508
+T++PV K L+D+K+ KA +HDIV
Sbjct: 314 ATIDPVAKVLKDSKVPKADVHDIV 337
Score = 61.3 bits (142), Expect = 1e-10
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +1
Query: 508 MVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXIL-HGDKSEEVQDXXXX 684
+VGGSTRIPKVQ+L+ DFF+G+ LNKSINPDE +L + S++ QD
Sbjct: 338 LVGGSTRIPKVQRLVSDFFDGRALNKSINPDEAVAYGAAVQAAVLTNKADSDKTQDLLLL 397
Query: 685 XXXXXXXGIETAGSV 729
G+ G+V
Sbjct: 398 DVVPLSLGVAMEGNV 412
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 124 bits (298), Expect = 2e-29
Identities = 53/82 (64%), Positives = 73/82 (89%)
Frame = +3
Query: 3 LNVLRIINEPTAAAIAYGLDKKGTGERNVLIFXLGGGTFDVSILTIEDGIFEVKSTAGDT 182
LNV+RI+NEPTAAAIAYGLDK T E++++++ LGGGTFDVS+L+I++G+FEV +T+GDT
Sbjct: 198 LNVIRIVNEPTAAAIAYGLDKTDT-EKHIVVYDLGGGTFDVSLLSIDNGVFEVLATSGDT 256
Query: 183 HLGGEDFDNRMVNHFVQEFKRK 248
HLGGEDFDNR++N+ + + RK
Sbjct: 257 HLGGEDFDNRVINYLARTYNRK 278
Score = 85.0 bits (201), Expect = 1e-17
Identities = 38/84 (45%), Positives = 60/84 (71%)
Frame = +2
Query: 257 DLATNKRALRRLRTACERAKRTLSSSTQASIXIDSLFEGIDFYTSITRARFEELNADLFR 436
D+ + +A+ +L+ E+AKRTLSS I I+S F G DF +++RA+FEE+N DLF+
Sbjct: 282 DVTKDLKAMGKLKREVEKAKRTLSSQKSVRIEIESFFNGQDFSETLSRAKFEEINMDLFK 341
Query: 437 STMEPVEKSLRDAKMDKAQIHDIV 508
T++PVE+ L+D+ + K++I DIV
Sbjct: 342 KTLKPVEQVLKDSNLKKSEIDDIV 365
Score = 59.3 bits (137), Expect = 6e-10
Identities = 33/76 (43%), Positives = 43/76 (56%)
Frame = +1
Query: 508 MVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXX 687
+VGGSTRIPKVQ+LL+ FF GK+ +K INPDE +L G++ + +
Sbjct: 366 LVGGSTRIPKVQELLESFF-GKKASKGINPDEAVAYGAAVQAGVLSGEEGSD--NIVLLD 422
Query: 688 XXXXXXGIETAGSVMT 735
GIET G VMT
Sbjct: 423 VIPLTLGIETTGGVMT 438
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 116 bits (280), Expect = 3e-27
Identities = 53/81 (65%), Positives = 66/81 (81%)
Frame = +3
Query: 3 LNVLRIINEPTAAAIAYGLDKKGTGERNVLIFXLGGGTFDVSILTIEDGIFEVKSTAGDT 182
LNVLR++NEPTAAA+AYGLDKK + V +F LGGGTFD+SIL + +G+FEV+ST GDT
Sbjct: 211 LNVLRVVNEPTAAALAYGLDKKN--DAIVAVFDLGGGTFDISILELNNGVFEVRSTNGDT 268
Query: 183 HLGGEDFDNRMVNHFVQEFKR 245
HLGGEDFD +V H V+ FK+
Sbjct: 269 HLGGEDFDVALVRHIVETFKK 289
Score = 51.2 bits (117), Expect = 2e-07
Identities = 27/88 (30%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Frame = +2
Query: 257 DLATNKRALRRLRTACERAKRTLSSSTQASIXIDSLFEGID----FYTSITRARFEELNA 424
DL+ ++ A++R+R A E+AK LSS ++ I + + I+RA+FE+L
Sbjct: 294 DLSKDRLAVQRIREAAEKAKCELSSLSKTDISLPFITADATGPKHINMEISRAQFEKLVD 353
Query: 425 DLFRSTMEPVEKSLRDAKMDKAQIHDIV 508
L R T++P +++L+DA + ++I++++
Sbjct: 354 PLVRRTIDPCKRALKDANLQTSEINEVI 381
Score = 41.1 bits (92), Expect = 2e-04
Identities = 26/76 (34%), Positives = 36/76 (47%)
Frame = +1
Query: 508 MVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXX 687
+VGG TR+P+V + ++ F +E KS+NPDE +L G V+D
Sbjct: 382 LVGGMTRMPRVVETVKSIFK-REPAKSVNPDEAVAIGAAIQGGVLSG----HVKDLVLLD 436
Query: 688 XXXXXXGIETAGSVMT 735
GIET G V T
Sbjct: 437 VTPLSLGIETLGGVFT 452
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 68.5 bits (160), Expect = 9e-13
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Frame = +3
Query: 3 LNVLRIINEPTAAAIAYGLDKKGTGE----RNVLIFXLGGGTFDVSILTIEDGIFEVKST 170
LN LR++N+ AAA+ YG+ K E R V I G + VSI+ G F +KST
Sbjct: 169 LNPLRLMNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSNYSVSIVEFSRGQFHIKST 228
Query: 171 AGDTHLGGEDFDNRMVNHFVQEFKRKYK 254
D +LG + D ++++F EFK KYK
Sbjct: 229 VCDRNLGSRNMDKALIDYFAAEFKEKYK 256
Score = 56.8 bits (131), Expect = 3e-09
Identities = 30/89 (33%), Positives = 50/89 (56%)
Frame = +2
Query: 239 QEEIQKDLATNKRALRRLRTACERAKRTLSSSTQASIXIDSLFEGIDFYTSITRARFEEL 418
+E+ + D+ +N +A RL TA ER K+ LS++ A + ++ + ID + I R+ FEEL
Sbjct: 252 KEKYKIDVLSNPKATFRLATAVERLKKVLSANANAPLNVEMIMNDIDASSFIKRSDFEEL 311
Query: 419 NADLFRSTMEPVEKSLRDAKMDKAQIHDI 505
L P+EK+L A + K ++ I
Sbjct: 312 IKPLLERLTPPIEKALELAGIKKEDLYSI 340
Score = 33.9 bits (74), Expect = 0.024
Identities = 15/32 (46%), Positives = 25/32 (78%)
Frame = +1
Query: 508 MVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 603
MVGG TR+P V++++ ++F GK L+ ++N DE
Sbjct: 342 MVGGCTRVPIVKEVIANYF-GKGLSFTLNQDE 372
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 62.9 bits (146), Expect = 5e-11
Identities = 32/84 (38%), Positives = 51/84 (60%)
Frame = +2
Query: 257 DLATNKRALRRLRTACERAKRTLSSSTQASIXIDSLFEGIDFYTSITRARFEELNADLFR 436
DL+ N RAL RL R K LS++++A I+ L +GIDF ITR+ E L D+
Sbjct: 286 DLSHNHRALARLEKEALRVKHILSANSEAIASIEELADGIDFRLKITRSVLESLCKDMED 345
Query: 437 STMEPVEKSLRDAKMDKAQIHDIV 508
+ +EP+ K+L+ A + ++I+ I+
Sbjct: 346 AAVEPINKALKKANLTFSEINSII 369
Score = 34.3 bits (75), Expect = 0.019
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +1
Query: 508 MVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 603
+ GG++RIP +Q L D+ + +++K++N DE
Sbjct: 370 LFGGASRIPFIQSTLADYVSSDKISKNVNADE 401
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 60.9 bits (141), Expect = 2e-10
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +2
Query: 257 DLATNKRALRRLRTACERAKRTLSSSTQASIXIDSLFEGIDFYTSITRARFEELNADLFR 436
D N R+L +LR CE KR LS+ T AS +DSL +GIDF++SI R R++ +
Sbjct: 276 DPRKNARSLAKLRAQCEITKRVLSNGTTASAAVDSLADGIDFHSSINRLRYDLAASATLN 335
Query: 437 STMEPVEKSLRDAKMDKAQIHDIV 508
+ V +++ A M+ I +++
Sbjct: 336 RMADLVTEAVEKANMEPFDISEVI 359
Score = 53.2 bits (122), Expect = 4e-08
Identities = 23/82 (28%), Positives = 50/82 (60%)
Frame = +3
Query: 3 LNVLRIINEPTAAAIAYGLDKKGTGERNVLIFXLGGGTFDVSILTIEDGIFEVKSTAGDT 182
L VL++I++P A +A ++ ++ V++ G +VS+++++ G+ + ++ D
Sbjct: 191 LPVLQLIHDPAAVILALMYSEEVLIDKTVVVANFGATRSEVSVVSVKGGLMTILASVHDE 250
Query: 183 HLGGEDFDNRMVNHFVQEFKRK 248
+LGGE + +VN F +EF++K
Sbjct: 251 NLGGEQLTDVLVNFFAKEFEKK 272
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 205 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVP 110
+KSSP K VSP V SK +S V + S +P
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIP 234
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 225 FVQEFKRKYKRTSLPTRELLGVCVLHVRGQRGPCHRPHK 341
F Q +KYK T T LLG+ + V+G+ G R HK
Sbjct: 459 FFQRLYKKYKITDEDTIGLLGISSIGVKGRHGK-KRWHK 496
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = -2
Query: 562 RNLAGASAPWGYEWSHPPYNIVDLSLIHLGITERLLHWLHGRPEQIGVQLLE 407
+ +A A W ++P +V ++ + + ER+ W H E +G+ ++E
Sbjct: 1163 KTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGISMIE 1214
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 500 RGFEPYPSWHHGETSPLAP 444
+ +P P+ HG+TSPL+P
Sbjct: 420 KAIKPMPTSIHGQTSPLSP 438
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 241 LNSWTKWLTMRLSKSSPPKWVSPAVDF 161
LN K++ SK P W+SPA DF
Sbjct: 256 LNYKNKFVNAWQSKVGPLPWMSPATDF 282
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = -2
Query: 205 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRXKISTFRSPVPFLS 59
+ S PP P + IP PPPR ST R P P S
Sbjct: 333 NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSS 381
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 231 QEFKRKYKRTSLPTRELLGVCVLHVRGQR-GPCHRPHKRAXR*ILSLR 371
+E K+ LP E + + + V G GP H+PH R R + LR
Sbjct: 4 KEIDINQKKNVLPKPEDIQLIICDVDGTLLGPDHKPHPRNLRALKYLR 51
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.8 bits (54), Expect = 6.5
Identities = 19/57 (33%), Positives = 22/57 (38%)
Frame = +3
Query: 57 LDKKGTGERNVLIFXLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 227
LDK G+ I GG T SIL +GI VK E F+N F
Sbjct: 48 LDKAPAGKVKDYIASHGGHTVITSILIANNGIAAVKEIRSIRKWAYETFNNERAIKF 104
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 356 LSXCSLVWTMTRSSLPSHMQYANA 285
+S C ++WTM+ P HM A
Sbjct: 265 MSFCGVIWTMSGYDAPFHMSEETA 288
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 359 SLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKA 490
SL G+D+YT I E +A +S+ E +K D + D++
Sbjct: 331 SLARGLDYYTGIIYEAVTEASAPKIKSSAE--KKKSADPEADRS 372
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 109 AVPSTCPSLPSRMVSSR*NPPPATPTW 189
++PST P++PS +S + PP T ++
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSY 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,303
Number of Sequences: 5004
Number of extensions: 63846
Number of successful extensions: 253
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -