Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0788
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834           31   1.4  
03_02_0565 - 9484045-9484335,9484621-9484686,9484790-9484867,948...    29   3.3  
05_07_0364 - 29611149-29611211,29611441-29611623,29611796-296118...    29   5.8  
11_06_0068 - 19759141-19761180                                         28   7.7  
10_08_0853 - 21076085-21076138,21076188-21076333,21076540-210766...    28   7.7  
06_01_0293 - 2139421-2139600,2139716-2140471,2140830-2140935,214...    28   7.7  

>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
          Length = 939

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
 Frame = +3

Query: 189 KSHHMLVPL*AKVLSTIEESSSL---FEWSVPTLKLRMVLMNYM---EPSTSKVCFYSEL 350
           K HH LV L       I+ESSS    F  ++P  + R  L+++     PS  +      +
Sbjct: 703 KHHHQLVDLLISEKQWIKESSSQTSPFRLALPQRRARSPLLSFFTNGRPSGQR----KHV 758

Query: 351 DKKDPNL--TVALKLPTGTESQNLTCEKNDNSENT 449
           D + P L  T    LPT       +C+ N+N   +
Sbjct: 759 DDRSPTLSRTSVHVLPTKNGKGQASCKSNENQSKS 793


>03_02_0565 -
           9484045-9484335,9484621-9484686,9484790-9484867,
           9485005-9485157,9485271-9485356,9485445-9485551,
           9485685-9485752,9485890-9485912,9487627-9487732,
           9487772-9487899,9487989-9488065,9488126-9488131,
           9488206-9488264
          Length = 415

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 545 ETPRKRKLRQLILVQDSFIKTQKMQIRRLQKKTSRYQKKIANL 673
           E  RKR  R LIL+ D+F+     Q    ++K S Y   +AN+
Sbjct: 43  ELERKR-YRTLILMADTFLANDLRQFPSAKRKASLYTSTLANI 84


>05_07_0364 -
           29611149-29611211,29611441-29611623,29611796-29611853,
           29612150-29612207,29612504-29612561,29612859-29612916,
           29613214-29613271,29613568-29613625,29613923-29613980,
           29614277-29614334,29614631-29614688,29614983-29615040,
           29615337-29615394,29615691-29615748,29616045-29616102,
           29616400-29616457,29616755-29616812,29617109-29617166,
           29617463-29617520,29617817-29617874,29618171-29618228,
           29618525-29618582,29618878-29618935,29619233-29619290,
           29619942-29619999,29620297-29620376,29620649-29620706,
           29621001-29621058,29621353-29621410,29621707-29621764,
           29622415-29622472,29622767-29622824,29623121-29623164,
           29623475-29623532,29623829-29623886,29624537-29624594,
           29624889-29624946,29625243-29625300,29625597-29625654,
           29626305-29626400,29626697-29626792,29627797-29627892,
           29628188-29628283,29629996-29630053,29630350-29630407,
           29630704-29630799,29631096-29631191,29632196-29632253,
           29632549-29632644,29633648-29633743,29634040-29634042
          Length = 1114

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +1

Query: 58  CKNNSCIVNYKKDSISFHTYPKDPKIKEMWINATGRGPSWFPTKNHTICSS 210
           C+NN C V Y  D   F   PK P ++ +       GPS  P    T  +S
Sbjct: 811 CRNNRCFVAYVVDPQIFDVSPKQPLLRGLCC-----GPSDIPRFAETTAAS 856


>11_06_0068 - 19759141-19761180
          Length = 679

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -3

Query: 367 LGSFLSNSE*KHTLDVEGSI*FINTIRNFNVGTDHSKSDELS 242
           +  FL   + +HT +V+GSI +++ I  F  GT  SK+D  S
Sbjct: 184 ISRFLYGGKTRHTKNVKGSIDYMDPIL-FRDGTQSSKNDVYS 224


>10_08_0853 -
           21076085-21076138,21076188-21076333,21076540-21076645,
           21076739-21076816,21076923-21076979,21077070-21077130,
           21077360-21077412,21077613-21077699,21077820-21077899,
           21079469-21079681,21079824-21080064
          Length = 391

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 663 IFF**RLVFF*SLLICIFCVFMKLSCTKIN-WR 568
           +FF   L FF    +C F VF +L CT  N WR
Sbjct: 48  LFFFFLLFFFFFFSVCDFLVFDRLHCTAANRWR 80


>06_01_0293 -
           2139421-2139600,2139716-2140471,2140830-2140935,
           2140999-2141249,2141342-2141443,2141557-2141876,
           2142350-2142546,2143668-2143786,2143876-2143997,
           2144877-2145081
          Length = 785

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/65 (23%), Positives = 38/65 (58%)
 Frame = +2

Query: 512 EQENLEKNDLIETPRKRKLRQLILVQDSFIKTQKMQIRRLQKKTSRYQKKIANLKDILKN 691
           ++E+L+ N  +     + +   I ++++ +  +K  +RRL +K  R ++++A  +D L+N
Sbjct: 346 QKESLDANQKLHKLGIQDIEDEIKLKETELTEEK--VRRLIRKKEREEQEVARREDQLRN 403

Query: 692 LNEKN 706
            N ++
Sbjct: 404 ENAES 408


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,571,841
Number of Sequences: 37544
Number of extensions: 414785
Number of successful extensions: 1043
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)