Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0788
         (813 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1701| Best HMM Match : No HMM Matches (HMM E-Value=.)               45   8e-05
SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_14973| Best HMM Match : THAP (HMM E-Value=1.9e-05)                  42   4e-04
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088)                  39   0.006
SB_30362| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_55298| Best HMM Match : THAP (HMM E-Value=2.4e-11)                  31   1.1  
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)                    31   1.1  
SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)               30   1.9  
SB_7649| Best HMM Match : PolyA_pol (HMM E-Value=6.4)                  29   3.4  
SB_6088| Best HMM Match : THAP (HMM E-Value=0.00037)                   29   4.5  
SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)                     28   7.8  
SB_18036| Best HMM Match : DUF29 (HMM E-Value=8)                       28   7.8  

>SB_1701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +1

Query: 28  NKMPRCSVIVCKNNSCIVNYKKDSISFHTYPKDPKIKEMW--INATGRGPSWFPTKNHTI 201
           NK   C   +  N SC      D+IS H +PKD K+K  W       R  S     N ++
Sbjct: 19  NKGRFCVAGLPNNVSCKNTSYTDNISMHNFPKDSKLKHEWEKFVRKNRPDSRARGDNISL 78

Query: 202 CSSHFEPKCFQPLKKVRRSS 261
           CS HF+ +C+   K V + +
Sbjct: 79  CSDHFKKECYDGPKLVSKDT 98


>SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +1

Query: 28  NKMPRCSVIVCKNNSCIVNYKKDSISFHTYPKDPKIKEMWINATGRGPSWFPTK--NHTI 201
           NK   C   +  N SC      D+IS H +PKD K++  W     +    F  +  N ++
Sbjct: 78  NKGRFCVAGLPNNVSCKNTSYTDNISMHNFPKDRKLRHEWEKFVRKHRPDFRARGDNISL 137

Query: 202 CSSHFEPKCFQPLK 243
           CS HF+ +C+   K
Sbjct: 138 CSDHFKKECYDXPK 151


>SB_14973| Best HMM Match : THAP (HMM E-Value=1.9e-05)
          Length = 317

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +1

Query: 34  MPRCSVIVCKNNSCIVNYKKDSISFHTYPKDPKIKEMWINATGRGPSWFPTKNHTICSSH 213
           M  C+V  CKN+S     K   ISFH  P++P ++  W         +     + +CS H
Sbjct: 1   MVNCAVPGCKNDS----RKTQGISFHRSPQEPSLRRKWAEIVACRVHFADLPKYCVCSDH 56

Query: 214 FEPKCFQPLKKVRR-SSNGRSQ 276
           F    ++     RR SS+ R Q
Sbjct: 57  FSNDSYKRRVNGRRCSSSQRKQ 78


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 20/63 (31%), Positives = 39/63 (61%)
 Frame = +2

Query: 512  EQENLEKNDLIETPRKRKLRQLILVQDSFIKTQKMQIRRLQKKTSRYQKKIANLKDILKN 691
            E EN++K+ + E   + K+ Q +   +  +KTQK  I+ LQ+  S+ +++ A L++ +K 
Sbjct: 2858 EGENMKKHVMAEKDARSKVEQELHESNEQMKTQKRNIQELQRNVSKLEEENAVLEEKVKL 2917

Query: 692  LNE 700
            L+E
Sbjct: 2918 LDE 2920


>SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088)
          Length = 866

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = +1

Query: 34  MPRCSVIVCKNNSCIVNYKKDSISFHTYP--KDPKIKEMWINATGR--GPSWFPTKNHTI 201
           M  C+V  C + S   N K   ISF + P  K P +++ W+    +   P    +K+  +
Sbjct: 1   MVHCAVSDCSSQSKNANGKSKKISFFSLPSEKRPVVRKSWLVRLTKLLPPGKNLSKDVFV 60

Query: 202 CSSHFEPKCFQPLKKVRRSSNG 267
           CS  F  +CF+P  +++ +  G
Sbjct: 61  CSLRFSDQCFEPAIELQNTLPG 82


>SB_30362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
 Frame = +1

Query: 58  CKNNSCIVNYKKDSISFHTYPKDPKIKEMWINATG-RGPSWFPTKNHTICSSHFEPKCF 231
           C    C  N+K    S H  PK    K  WI        ++ P     +CS HFE +C+
Sbjct: 6   CVAQDCENNHKAGK-SLHLSPKSGPKKAEWIRFVRLHSKNFNPLGRFVVCSDHFERECY 63


>SB_55298| Best HMM Match : THAP (HMM E-Value=2.4e-11)
          Length = 273

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 103 SFHTYPKDPKIKEMWIN--ATGRGPSWFPTKNHTICSSHFEPKCFQPLKKVR 252
           +FH +PK+ + K  W++  + G G   F TK   +C  HF    ++ ++  R
Sbjct: 19  NFHPFPKNAERKRQWLHIISEGAGEVEF-TKKSRVCWKHFTDSDYKEVRDSR 69


>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 918

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 360 PFYPIQNKSTLWMWKVPYNSSIP 292
           P + +  K T W W VPYN  +P
Sbjct: 528 PLHQLLKKDTKWCWMVPYNPHLP 550


>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
          Length = 837

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 360 PFYPIQNKSTLWMWKVPYNSSIP 292
           P + +  K T W W VPYN  +P
Sbjct: 351 PLHQLLKKDTKWCWMVPYNPHLP 373


>SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1098

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/46 (36%), Positives = 29/46 (63%)
 Frame = +2

Query: 563 KLRQLILVQDSFIKTQKMQIRRLQKKTSRYQKKIANLKDILKNLNE 700
           KLR+L  ++D+  K QK Q+  L+KK  + ++K   L +  K++NE
Sbjct: 228 KLRKLASLKDAPEKNQK-QVEELEKKIQQLEEKEKQLMEKNKDVNE 272


>SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)
          Length = 491

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 399 TESQNLTCEKNDNSENTAPTSTIYGIDTNFNARQNS 506
           T+    TC+ N+NSE  AP + I  I T     QN+
Sbjct: 278 TDDDGTTCDGNNNSELDAPNNHIASIKTPTRKNQNN 313


>SB_7649| Best HMM Match : PolyA_pol (HMM E-Value=6.4)
          Length = 318

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 348 LDKK-DPNLTVALKLPTGTESQN--LTCEKNDNSENTAPTSTIYGIDTNFNARQNSIWNK 518
           LDK  + +  V  +  +G++ Q+  +    N    +  P ++ +G  T  +A  +    K
Sbjct: 224 LDKHTNHSFGVTSRSTSGSQDQHNIMPLAPNPPRFSLLPLTSHHGGSTYSSAEDSYDIRK 283

Query: 519 KIWKKMISSKHLE 557
           K+WKK+   KH+E
Sbjct: 284 KVWKKLYKPKHIE 296


>SB_6088| Best HMM Match : THAP (HMM E-Value=0.00037)
          Length = 118

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = +1

Query: 82  NYKKDSISFHTYPKDPKIKEMWINATG-RGPSWFPTKNHTICSSHFEPKCF 231
           N +K   S H   K    K  WI        ++ P     +CS HFE +C+
Sbjct: 28  NNQKTGKSLHLSQKSGPKKAEWIRFVRLHSKNFNPLGRFVVCSDHFERECY 78


>SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/42 (26%), Positives = 28/42 (66%)
 Frame = +2

Query: 578 ILVQDSFIKTQKMQIRRLQKKTSRYQKKIANLKDILKNLNEK 703
           ++ ++S +K+ + ++ R+Q+ +   +KKIA+L++ L   N +
Sbjct: 797 LVTRESEVKSLREELTRMQQGSEELKKKIASLEESLIKANNE 838


>SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 554 RKRKLRQLILVQDSFIKTQKMQIRRLQKKTSRYQKKIANLKDIL 685
           R+R+ RQ++L +      +K  + R QK   +     +NL D+L
Sbjct: 274 RERQNRQILLTKGELHADKKESLERAQKSYEKLLASTSNLADVL 317


>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
          Length = 1447

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 557 KRKLRQLILVQDSFIKTQKMQIRRLQKKTSRYQKKIANLKDILKNL-NEKNFISAD 721
           K +L++  + QD   K  KM++   ++K    + KI +L++  KNL ++ N  + D
Sbjct: 526 KEQLKKNKVAQDEQGKKLKMEVSMTRQKLQEAEAKIRSLQEECKNLESQLNMANTD 581


>SB_18036| Best HMM Match : DUF29 (HMM E-Value=8)
          Length = 125

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 554 RKRKLRQLILVQDSFIKTQKMQIRRLQKKTSRYQKKIANLKDIL 685
           R+R+ RQ++L +      +K  + R QK   +     +NL D+L
Sbjct: 71  RERQNRQILLTKGELHADKKESLERAQKSYEKLLASTSNLADVL 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,873,810
Number of Sequences: 59808
Number of extensions: 521447
Number of successful extensions: 1551
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)