Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0788
(813 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04100.1 68416.m00434 MADS-box family protein contains Pfam p... 30 2.1
At2g34270.1 68415.m04193 hypothetical protein and genscan 30 2.1
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 30 2.1
At1g43730.1 68414.m05028 hypothetical protein 30 2.1
At1g64360.1 68414.m07294 expressed protein 29 2.8
At4g34080.1 68417.m04835 expressed protein contains Pfam profile... 29 3.7
At3g28350.1 68416.m03543 hypothetical protein 29 3.7
At2g45260.1 68415.m05634 expressed protein contains Pfam profile... 29 3.7
At4g23860.2 68417.m03431 PHD finger protein-related similar to P... 29 4.9
At4g23860.1 68417.m03430 PHD finger protein-related similar to P... 29 4.9
At3g58240.1 68416.m06493 meprin and TRAF homology domain-contain... 29 4.9
At3g58110.1 68416.m06480 expressed protein 28 8.5
>At3g04100.1 68416.m00434 MADS-box family protein contains Pfam
profile: PF00319 SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 207
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Frame = +2
Query: 515 QENLEKND---LIETPRKRKLRQLILVQDSFIKTQKMQIRRLQ-KKTSRYQKKI 664
QE LE++D L+E +KR+L L+ ++ + M + +L+ K SR +KK+
Sbjct: 87 QEPLERDDTRPLVEAYKKRRLHDLVKKMEALEEELAMDLEKLKLLKESRNEKKL 140
>At2g34270.1 68415.m04193 hypothetical protein and genscan
Length = 374
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 456 TSTIYGIDTNFNARQNSIWNKKIWKKMISSKHLESV 563
T TI+ NA N W + WK + +++HLE+V
Sbjct: 321 TETIFW--AKVNAELNKCWGESFWKYVEAARHLEAV 354
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 611 KMQIRRLQKKTSRYQKKIANLKDILKNLNEKNFISA 718
++ I RL+K K NLK+I K+ E+NF+SA
Sbjct: 304 EISIARLRKLEDNSLKPSQNLKNIAKDEYERNFVSA 339
>At1g43730.1 68414.m05028 hypothetical protein
Length = 320
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -1
Query: 327 WMWKVPYNS-SIPYATSMLGPTIRRATNFLQWLKALWLKVGRAYGVIFCWEPAW 169
++WK ++ S ++T+ + + + W KA+W K CW AW
Sbjct: 120 FIWKTDLHAPSNIFSTAKTSLALHPQNHIVPWYKAVWFKNHVPKHAFICWVVAW 173
>At1g64360.1 68414.m07294 expressed protein
Length = 85
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 384 KLPTGTESQNLTCEKNDN-SENTAPTSTIYGIDTNFNARQNSIWNKKIWKKMISSKH 551
K PT +N+T EK+D+ S+N T+ G T F AR +S W++ ++ S +
Sbjct: 8 KKPTEM-GRNMTHEKSDSDSDNEGAPMTVGGY-TEFVARSDSDWDEPVYSGKARSNY 62
>At4g34080.1 68417.m04835 expressed protein contains Pfam profile
PF04859: Plant protein of unknown function (DUF641
Length = 331
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +2
Query: 506 HLEQENLEKNDLIETPRKRKLRQLILVQDSFIKTQKMQIRRLQKKTSRYQKKIANLKDIL 685
H +EN K + +P+ +L I Q S +KT ++ +++ Q + +I + +
Sbjct: 64 HFYRENNPKPVCV-SPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEITQMLQKI 122
Query: 686 KNLNEK 703
+ N+K
Sbjct: 123 EEANQK 128
>At3g28350.1 68416.m03543 hypothetical protein
Length = 290
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 572 QLILVQDSFIKTQKMQIRRLQKKTSRYQKKIANLKDILKNLN 697
QL ++ ++ QKMQ +LQK+ Y+KK++ ++ I + N
Sbjct: 156 QLAKEEEGYLAEQKMQ-EQLQKEFDEYEKKMSLIEAITEKTN 196
>At2g45260.1 68415.m05634 expressed protein contains Pfam profile
PF04859: Plant protein of unknown function (DUF641
Length = 425
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +2
Query: 506 HLEQENLEKNDLIETPRKRKLRQLILVQDSFIKTQKMQIRRLQKKTSRYQKKIANLKDIL 685
H +EN K + +P+ +L I Q S +KT ++ +++ Q + +I + +
Sbjct: 88 HFYRENNPKPVCV-SPQDSRLAAEIQEQQSLLKTYEVMVKKFQSEIQNKDSEITQMLQKI 146
Query: 686 KNLNEK 703
+ N+K
Sbjct: 147 EEANQK 152
>At4g23860.2 68417.m03431 PHD finger protein-related similar to Pfam
profiles PF02207: Putative zinc finger in N-recognin,
weak hit to PF00628: PHD-finger
Length = 452
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/61 (22%), Positives = 34/61 (55%)
Frame = +2
Query: 542 IETPRKRKLRQLILVQDSFIKTQKMQIRRLQKKTSRYQKKIANLKDILKNLNEKNFISAD 721
+E ++RK+ L+ +D+ ++ +K + +K+T + +K+ D+L NL+ + +
Sbjct: 353 LEMYKQRKVSYLLDAEDTIVEYEK---KAKEKRTEKLEKQEGEALDLLNNLDHVSKVELL 409
Query: 722 H 724
H
Sbjct: 410 H 410
>At4g23860.1 68417.m03430 PHD finger protein-related similar to Pfam
profiles PF02207: Putative zinc finger in N-recognin,
weak hit to PF00628: PHD-finger
Length = 452
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/61 (22%), Positives = 34/61 (55%)
Frame = +2
Query: 542 IETPRKRKLRQLILVQDSFIKTQKMQIRRLQKKTSRYQKKIANLKDILKNLNEKNFISAD 721
+E ++RK+ L+ +D+ ++ +K + +K+T + +K+ D+L NL+ + +
Sbjct: 353 LEMYKQRKVSYLLDAEDTIVEYEK---KAKEKRTEKLEKQEGEALDLLNNLDHVSKVELL 409
Query: 722 H 724
H
Sbjct: 410 H 410
>At3g58240.1 68416.m06493 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 317
Score = 28.7 bits (61), Expect = 4.9
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 317 RFHIIHQYHTQLQCWD 270
RFH+ Y+ ++QCWD
Sbjct: 139 RFHVSKDYNMEMQCWD 154
>At3g58110.1 68416.m06480 expressed protein
Length = 784
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Frame = +3
Query: 363 PNLTVALKLPTGTESQNLTCEKNDNSENTAPTSTIYGI-DTNFNARQNSIWNKKI----W 527
P+L ALKLP + +T E+ + EN I I T +++ +W + W
Sbjct: 197 PDLARALKLPMKKDFV-VTEEERELLENDESVRFIDEIVSTCVLLQRDDMWIMPVEIVEW 255
Query: 528 KKMISSKHLESVNYAN*FWY 587
+ I KHLE +++ W+
Sbjct: 256 TRDIKQKHLEKLDWPKLLWF 275
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,672,464
Number of Sequences: 28952
Number of extensions: 375865
Number of successful extensions: 1058
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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