Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0787
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 178 6e-46
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 95 1e-20
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 94 2e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 88 2e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 58 1e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 54 2e-08
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 33 0.062
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 28 1.3
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 4.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.1
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.4
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.4
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 26 7.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 178 bits (434), Expect = 6e-46
Identities = 79/83 (95%), Positives = 81/83 (97%)
Frame = +3
Query: 255 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 434
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LL
Sbjct: 46 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLL 105
Query: 435 TEAPLNPKANREKMTQIMFETFN 503
TEAPLNPK+NREKMTQI+FETFN
Sbjct: 106 TEAPLNPKSNREKMTQIIFETFN 128
Score = 108 bits (260), Expect = 8e-25
Identities = 51/55 (92%), Positives = 53/55 (96%)
Frame = +2
Query: 509 AMYVAXQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 673
A YVA QAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDL
Sbjct: 131 AFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDL 185
Score = 91.5 bits (217), Expect = 1e-19
Identities = 39/44 (88%), Positives = 43/44 (97%)
Frame = +1
Query: 124 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV 255
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MV
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMV 45
Score = 39.1 bits (87), Expect = 7e-04
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +1
Query: 733 EREIVRDIQGKLCYVALEFE 792
EREIVRDI+ KLCYVAL+FE
Sbjct: 205 EREIVRDIKEKLCYVALDFE 224
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 675 TDYLMKILXERGY 713
TDYLMKIL ERGY
Sbjct: 186 TDYLMKILMERGY 198
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 95.1 bits (226), Expect = 1e-20
Identities = 38/85 (44%), Positives = 62/85 (72%)
Frame = +3
Query: 246 RDGGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 425
+ G + KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 426 VLLTEAPLNPKANREKMTQIMFETF 500
+LLTE P+NP ANREKM + MFE +
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERY 127
Score = 77.8 bits (183), Expect = 2e-15
Identities = 35/56 (62%), Positives = 44/56 (78%)
Frame = +2
Query: 512 MYVAXQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLHR 679
+YVA QAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD R
Sbjct: 132 VYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATR 187
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 130 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 234
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 93.9 bits (223), Expect = 2e-20
Identities = 41/81 (50%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Frame = +3
Query: 264 QKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTE 440
QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE
Sbjct: 53 QKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTE 112
Query: 441 APLNPKANREKMTQIMFETFN 503
PL N+EK+ + +ET N
Sbjct: 113 PPLANIRNKEKIAEYFYETLN 133
Score = 70.9 bits (166), Expect = 2e-13
Identities = 30/55 (54%), Positives = 45/55 (81%)
Frame = +2
Query: 509 AMYVAXQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 673
A+ + Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+
Sbjct: 136 ALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDV 190
Score = 55.2 bits (127), Expect = 1e-08
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +1
Query: 142 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 252
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVM 48
Score = 29.9 bits (64), Expect = 0.44
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +1
Query: 733 EREIVRDIQGKLCYVALEF 789
E+EIVR+I+ K CYVA +F
Sbjct: 210 EKEIVREIKEKCCYVASDF 228
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 87.8 bits (208), Expect = 2e-18
Identities = 38/79 (48%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +3
Query: 270 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 446
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 447 LNPKANREKMTQIMFETFN 503
LNP NRE +IMFE+FN
Sbjct: 133 LNPPENRENTAEIMFESFN 151
Score = 57.2 bits (132), Expect = 3e-09
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 8/64 (12%)
Frame = +2
Query: 506 AAMYVAXQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 661
A +Y+A QAVL+L AS + TG V+DSGDGV+H +P+ EGY + +I + LA
Sbjct: 153 AGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLA 212
Query: 662 GRDL 673
GRD+
Sbjct: 213 GRDV 216
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +1
Query: 142 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 225
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.4 bits (135), Expect = 1e-09
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +3
Query: 246 RDGGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 422
RD + + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 423 PVLLTEAPLNPKANREKMTQIMFETFN 503
P+ +TE NP R MT+++FE +N
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYN 143
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 142 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 237
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 560 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 664
++GIVL+ G+ SH +P+ G + R+ G
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGG 199
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 54.0 bits (124), Expect = 2e-08
Identities = 24/62 (38%), Positives = 35/62 (56%)
Frame = +3
Query: 312 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 491
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 492 ET 497
E+
Sbjct: 123 ES 124
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 127 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 228
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 509 AMYVAXQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 631
A Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 129 ATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +3
Query: 267 KDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 440
++ YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 49 RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108
Query: 441 APLNPKANREKMTQIMFE 494
NP++ R+++ + FE
Sbjct: 109 PSWNPQSVRQQIMEAAFE 126
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 127 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 228
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 32.7 bits (71), Expect = 0.062
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 518 VAXQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 667
+A + ++ LYA G G+V+D G + PI +G + A +L L GR
Sbjct: 180 IAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGR 229
Score = 30.7 bits (66), Expect = 0.25
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +3
Query: 327 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 494
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 569 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 667
+V+DSG +H +P+ + A+ R+D+ G+
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGK 191
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 387 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFN 503
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSEN 1439
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 552 PVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 644
P VP S P+ P P PS+ P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 172 KAGFAGDDAP-RAVFPSIVGRPRHQGVMVVWD 264
KA F+G R+ + VG+P H G++ WD
Sbjct: 1533 KAKFSGQKGTLRSKYSLEVGKPMHYGIISEWD 1564
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 429 LLTEAPLNPKANREKMTQIMFETFN 503
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 594 SPTPCPSTRDTHSPTPSCVWT*PVATFTDY 683
SP+P P++ D S T W+ + F D+
Sbjct: 244 SPSPIPNSNDNDSQTRRSSWSSIASAFNDF 273
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +2
Query: 470 EDDPDHVRNIQHAAMYVAXQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 649
+DDPD ++ +A+++ A S ++ G D +++ I + +P A R
Sbjct: 8 DDDPDFASDVDNASLFTQSIATTSA-STSVDDGFSFDDSISRLNSLSISD---VPSAHSR 63
Query: 650 LDLAGRDLHRLPHE 691
++ + +H L HE
Sbjct: 64 VEQWNQQVHNLNHE 77
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +3
Query: 561 PPVSCWTPATVSPTPCPSTRDTHSP 635
PPV+C TP P C + H P
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,783
Number of Sequences: 5004
Number of extensions: 63033
Number of successful extensions: 205
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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