Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0786
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09450.1 68416.m01123 hypothetical protein                          30   1.9  
At5g40260.1 68418.m04884 nodulin MtN3 family protein similar to ...    28   5.9  
At5g57700.2 68418.m07213 BNR/Asp-box repeat family protein conta...    28   7.8  
At5g57700.1 68418.m07212 BNR/Asp-box repeat family protein conta...    28   7.8  

>At3g09450.1 68416.m01123 hypothetical protein
          Length = 775

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 660 IRNRNAEAKDRIYG*DSQMFRLCIYVGDKLKNVINI 553
           +R  N ++ +R+ G  S++  LC+YV D LKN+  +
Sbjct: 604 LRRLNTDSYNRLLGSFSKISDLCLYVCDGLKNLSGV 639


>At5g40260.1 68418.m04884 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 239

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 402 IIVKLFFLNYYIMVCQH*TSNKNKNCLNF 488
           ++++LF++  Y+M C H   N  +N L F
Sbjct: 80  LVIELFYVGVYLMYCGH-KKNHRRNILGF 107


>At5g57700.2 68418.m07213 BNR/Asp-box repeat family protein contains
           Pfam PF02012: BNR/Asp-box repeat
          Length = 347

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 683 RFWRAFGPIYVXAKTLSQTCLQPV 754
           R WR  GPIY+  K+LS   +QPV
Sbjct: 169 RTWRKKGPIYIQGKSLS--VIQPV 190


>At5g57700.1 68418.m07212 BNR/Asp-box repeat family protein contains
           Pfam PF02012: BNR/Asp-box repeat
          Length = 352

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 683 RFWRAFGPIYVXAKTLSQTCLQPV 754
           R WR  GPIY+  K+LS   +QPV
Sbjct: 174 RTWRKKGPIYIQGKSLS--VIQPV 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,028,350
Number of Sequences: 28952
Number of extensions: 283082
Number of successful extensions: 598
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)