Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0783
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   4.3  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   5.7  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    26   5.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   10.0 
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   10.0 
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    25   10.0 

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 431  NNKSTEPLQIIREQWQAQGSVETVPL 354
            NN++ E L IIR+++Q     ET+PL
Sbjct: 2331 NNEANEVLDIIRKKFQGFMPGETIPL 2356


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 725  AHRA*PERFANLYIERAVLNLSPGSEWRPTKKE 823
            +HR  P++F  L +  ++LN+ P S   P  K+
Sbjct: 940  SHRVSPKQFLELSVRPSILNMEPFSMKEPQFKK 972


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 458 NYLCAYLTDNNKSTEPLQIIREQWQAQGSVETVPLGSVQSNQTN 327
           NY    L  N + T PL+ +R+ W +  S  +  L     N+ N
Sbjct: 15  NYQENSLNTNEEQTNPLESLRDGWASSNSSSSSSLLLPDENEGN 58


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 114 NFLVSAIPLSNATINRFLIDIN 179
           NF+VS I   N  I+RF  +IN
Sbjct: 697 NFIVSTILRDNTAISRFTTEIN 718


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 649 QFVYYYYLLLLIASKGYSGLHW 714
           +F   Y+  LLI+ K Y+GL W
Sbjct: 779 EFEKVYFPYLLISKKRYAGLFW 800


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 827 KFPSWWVAIPTPVIDSALLFLYKG*QIS 744
           KF + +VAIP+PV+     FL+    +S
Sbjct: 438 KFAAVFVAIPSPVLGGMTTFLFSSVAVS 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,453,960
Number of Sequences: 5004
Number of extensions: 71315
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)