Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0783
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1160 + 30826972-30828375,30828641-30828754,30828901-308290...    35   0.091
01_02_0098 - 11087875-11089110,11091744-11092022                       29   4.5  
12_02_1138 - 26397585-26398682                                         29   6.0  
07_01_0149 - 1081805-1081821,1081860-1081941,1082412-1083425           29   6.0  

>03_05_1160 +
           30826972-30828375,30828641-30828754,30828901-30829032,
           30830087-30830224
          Length = 595

 Score = 34.7 bits (76), Expect = 0.091
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = -1

Query: 398 REQWQAQGSVETVPLGSVQSNQTNSADKSTVPDDA 294
           R+QW+   S +++P G  +S  T+SA+ ST PD++
Sbjct: 144 RKQWEKAASRKSMPQGFRKSTSTSSAESSTQPDES 178


>01_02_0098 - 11087875-11089110,11091744-11092022
          Length = 504

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 421 LLNHYKSSGNSGKRKEVWKLCHWAQSKATKQT 326
           LL+HY +SGN  + K +W+    A  K T ++
Sbjct: 285 LLSHYANSGNLSEVKRIWESLKSAFKKCTNRS 316


>12_02_1138 - 26397585-26398682
          Length = 365

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 587 GHPHTYRPEQHSNYAAKE 534
           GHPHTYRP++ S    +E
Sbjct: 313 GHPHTYRPDEVSGELIRE 330


>07_01_0149 - 1081805-1081821,1081860-1081941,1082412-1083425
          Length = 370

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 431 CLLNRHKGNFFNKVTILLHVYVDVLRFARVTTQLFLLLRNCYVVLACKCG 580
           CL +   G + +KV+I+   YV++L    V   LF +  N   +L    G
Sbjct: 182 CLYSSETGEWSSKVSIVFDSYVEMLPSLLVEDMLFFICENGIRILGYDIG 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,576,966
Number of Sequences: 37544
Number of extensions: 417579
Number of successful extensions: 951
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)