Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0783
         (830 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11841| Best HMM Match : Ras (HMM E-Value=0)                         29   3.5  
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)           29   6.1  
SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_11841| Best HMM Match : Ras (HMM E-Value=0)
          Length = 523

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -1

Query: 461 KNYLCAYLTDNNKSTEPLQIIREQWQAQGSVETVPLGSVQSNQTNSADKSTVPDDA 294
           + +LC +  +N+KS E +   REQ +     E VP+  V  N+ +   ++    DA
Sbjct: 302 EGFLCVFAVNNSKSFEDINQYREQIKRVKDAEEVPMVLV-GNKCDLPQRTVSTSDA 356


>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
          Length = 3015

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = -3

Query: 522  VTRANLNTST*TCKRIVTLLKKLPLCLFNRQQQIY*TTTNHQGTVASARKCGNCATGLSP 343
            +T A++NT+  T   +VT++  +  C +    Q   T+   +    + R+  +C   + P
Sbjct: 1184 ITTAHINTTITTAHIVVTIITIIMACSYFIGLQYVKTSRTRRSCFGNGRQKRSC---IEP 1240

Query: 342  KQPNKLSRQVNCP 304
            K P +L  +   P
Sbjct: 1241 KDPPQLGNRTVMP 1253


>SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 549  LRSKRNSWVVTRANLNTST*TCKRIVTLLKKLPLCLF 439
            ++ + N+W V      TST T KR+   LKK  + LF
Sbjct: 1226 IKRQNNTWQVETKEHETSTTTTKRLQKSLKKAKIKLF 1262


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,585,722
Number of Sequences: 59808
Number of extensions: 516210
Number of successful extensions: 1095
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)