Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0782
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p...   113   3e-26
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    29   0.55 
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi...    28   1.7  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   2.2  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    27   3.9  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   3.9  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   3.9  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   5.1  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   9.0  

>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score =  113 bits (271), Expect = 3e-26
 Identities = 47/78 (60%), Positives = 56/78 (71%)
 Frame = +1

Query: 508 NQFSEYDSKHKVRHQFVEALQSKFKDSGLKFALGGQISIDVFPIGWDKTYCLNHIASENF 687
           N+F  +D   K+R   V+ L+ KFKD GL F++GGQIS DVFP GWDKTYCL H+  E F
Sbjct: 152 NEFERFDKGRKIRATMVDVLREKFKDYGLTFSIGGQISFDVFPAGWDKTYCLQHVEKEGF 211

Query: 688 AEIHFFGDKTDPGGNDHE 741
             IHFFGDKT  GGND+E
Sbjct: 212 DTIHFFGDKTYKGGNDYE 229



 Score =  103 bits (248), Expect = 2e-23
 Identities = 46/109 (42%), Positives = 75/109 (68%)
 Frame = +2

Query: 233 EDFRTNGREDVVSNFNYVFSENGLVHHKNGKKLSSESIVNHLGEQKLQEVINFAMGYMSN 412
           E    NG E+V+ +F+Y F+ENGL  ++ G++L+S+S +  LGE+K Q+++NF + Y+++
Sbjct: 61  EQLSVNG-ENVIDSFDYAFAENGLTAYRYGQQLASQSFIAWLGEEKYQKLVNFCLHYIAD 119

Query: 413 IKLPVKRGNFIEFRSSMLNICPVGRSCNQIERISFLSMIQNTKLGTNLL 559
           + +PVKRG FIEFR+ M+NI PVGR+ N  ER  F    +  K+   ++
Sbjct: 120 LDIPVKRGTFIEFRNGMINISPVGRNANTEERNEFERFDKGRKIRATMV 168



 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 23/52 (44%), Positives = 29/52 (55%)
 Frame = +3

Query: 96  KVLYLFDVDGTLTKPRQKITEEFRRFILDEVKSKVDVGLVSGSDYMKISEQM 251
           K L LFDVDGTLT  R  ++ E     L  ++  V +G V GSD  K  EQ+
Sbjct: 13  KTLVLFDVDGTLTPARLSVSPEMLE-TLQNLRKVVAIGFVGGSDLSKQQEQL 63


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = -1

Query: 211 NPTSTFDFTSSRMNLLNSSVIFWRGFVNVPSTSNKYKTFF*LVIIVSKGETSLNFGGNFG 32
           NP+STFD +++  N  N++  F   F N   +    +  F     ++ G  S   G  F 
Sbjct: 124 NPSSTFDMSTNLFNSKNANTSFTNAFSNEGISPGFLRDCFPSSNSITTGTASPKLGSPFN 183

Query: 31  PVDK 20
            +++
Sbjct: 184 HINR 187


>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
           Bub3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 320

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 3   SLVVSYLSTGPKLPPKFKLVSPFETIMTSQKKVLYLFDVDGTLT 134
           SL+   +S  P+L  K+ L SP  ++  + +K   + ++DGT+T
Sbjct: 36  SLLHYQISENPELLGKYDLSSPILSLEYTDEKTALVGNLDGTVT 79


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -1

Query: 310 MHQSIFTEYVVEIGHDVLSPICS--EIFI*SEPLTNPTSTFDFTSSRMNLLNSSVIFWRG 137
           MH S+  E  V +G  + SP     +  I     T+P S+    SS   L+NSSVI   G
Sbjct: 61  MHSSLHEE--VSVGSSIASPSSRIPDKAISQYYETSPPSSTSSLSSNNQLMNSSVILSPG 118

Query: 136 FVNVPSTSNKY 104
              +P  +N Y
Sbjct: 119 QF-LPDDANAY 128


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 679 ENFAEIHFFGDKTDPGGNDHEFTMTLR 759
           EN   + FFG K DP      FT+T+R
Sbjct: 178 ENCVRLIFFGRKYDPFLRSRMFTLTIR 204


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 233 EDFRTNGREDVVSNFNYVFSENGLVHHKNGKKLSSESIVNHLG 361
           E+ R+ GR D + +   V++    + ++NG  +S  S + H G
Sbjct: 88  ENGRSVGRHDDLLSLGNVYNGVASLRYRNGASVSRSSSIGHSG 130


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 410 WTCNPWRSLLPLAVFV 363
           WT N W++LLP++ ++
Sbjct: 27  WTFNKWKALLPVSAYI 42


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 372 SFCSPKWLT---MLSELNFFPFL*CTSPFSLN 286
           S CSP W++   +L+ L F P + C++   LN
Sbjct: 121 STCSPLWISVIYLLNPLTFLPGIACSADMILN 152


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
 Frame = +2

Query: 293 ENGLVHHKNGKKLSSESIVNHLGEQKLQEVI--NFAMGYMSNIKLPVKRGNFIEFRSSML 466
           E+G+   + G++  +++IV H+G Q L+  +  N     +  +     R  F + R  + 
Sbjct: 39  EDGIEESELGEEKDNKTIVLHIGSQNLRIGLASNKTPTTVPMVIARKMRAPFAQERCLLK 98

Query: 467 NICPVGRSCNQIERISFLSMIQNTKLGTNLLKHFKASSKTR 589
           +IC V    N      F S   N KL  + LK +  + K R
Sbjct: 99  DICHVNEDGNVAFDSEFDS---NLKLLDSELKSWLKAQKKR 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,234,494
Number of Sequences: 5004
Number of extensions: 68381
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)