Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0782
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1626 + 34863691-34863762,34863895-34863939,34864047-348641...   106   2e-23
07_03_0815 + 21707061-21707112,21707394-21708286,21709289-217094...    30   1.8  
07_03_0305 - 16475127-16476017,16476058-16478067                       30   1.8  
01_01_0388 - 3003096-3003149,3003168-3003197,3003245-3003304,300...    30   1.8  
02_05_0893 + 32578890-32579003,32579325-32579554,32580147-32580768     29   3.1  
11_01_0665 - 5413561-5413593,5413785-5413907,5414020-5414259,541...    28   9.4  

>04_04_1626 +
           34863691-34863762,34863895-34863939,34864047-34864113,
           34864234-34864310,34864570-34864605,34864687-34864742,
           34864816-34864915,34864995-34865090,34865167-34865256,
           34865466-34865517,34866101-34866156
          Length = 248

 Score =  106 bits (254), Expect = 2e-23
 Identities = 43/87 (49%), Positives = 68/87 (78%)
 Frame = +2

Query: 257 EDVVSNFNYVFSENGLVHHKNGKKLSSESIVNHLGEQKLQEVINFAMGYMSNIKLPVKRG 436
           + V ++++Y FSENGLV HKNG+ + ++S+ + LG+ +L+E INF + Y++++ +P+KRG
Sbjct: 60  KSVTTDYDYCFSENGLVAHKNGELIGTQSLKSFLGDDQLKEFINFTLHYIADLDIPIKRG 119

Query: 437 NFIEFRSSMLNICPVGRSCNQIERISF 517
            FIEFRS MLN+ P+GR+C+Q ER  F
Sbjct: 120 TFIEFRSGMLNVSPIGRNCSQEERDEF 146



 Score =  101 bits (241), Expect = 8e-22
 Identities = 44/78 (56%), Positives = 55/78 (70%)
 Frame = +1

Query: 508 NQFSEYDSKHKVRHQFVEALQSKFKDSGLKFALGGQISIDVFPIGWDKTYCLNHIASENF 687
           ++F +YD  H +R + V  L+ KF    L F++GGQIS DVFP GWDKTYCL ++  E F
Sbjct: 144 DEFEKYDKVHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL--EEF 201

Query: 688 AEIHFFGDKTDPGGNDHE 741
            EIHFFGDKT  GGND+E
Sbjct: 202 QEIHFFGDKTYKGGNDYE 219



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 30/64 (46%), Positives = 43/64 (67%)
 Frame = +3

Query: 99  VLYLFDVDGTLTKPRQKITEEFRRFILDEVKSKVDVGLVSGSDYMKISEQMGERTSCPIS 278
           VL LFDVDGTLT PR+ +T E  +F + +++  V VG+V GSD +KISEQ+G+  +    
Sbjct: 9   VLALFDVDGTLTAPRKVVTPEMLQF-MKQLREHVTVGVVGGSDLVKISEQLGKSVTTDYD 67

Query: 279 TTYS 290
             +S
Sbjct: 68  YCFS 71


>07_03_0815 +
           21707061-21707112,21707394-21708286,21709289-21709459,
           21709880-21710143,21710404-21710421
          Length = 465

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 450 NSMKLPLLTGNLMLD-M*PMAKFIT-SCSFCSPKWLTMLS 337
           N M L  + G L L+ + P  KF+T SC FCS  WL  ++
Sbjct: 200 NWMNLSAVRGLLRLNAVVPRLKFLTVSCCFCSSTWLVAMA 239


>07_03_0305 - 16475127-16476017,16476058-16478067
          Length = 966

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +2

Query: 419 LPVKRGNFIEFRSSMLNICPVGRSCNQI-----ERISFLSMIQNTKLGTNLL 559
           L V +G  +EFRS ++ +  +  SCN +     E IS L+ ++N  L  N L
Sbjct: 758 LVVTKGQQLEFRSGIIYMVNIDLSCNNLTGHIPEDISMLTALKNLNLSWNHL 809


>01_01_0388 -
           3003096-3003149,3003168-3003197,3003245-3003304,
           3003431-3003552,3003669-3003794,3003890-3003980,
           3004261-3004386,3004501-3004656
          Length = 254

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 126 TLTKPRQKITEEFRRFILDEVKSKVDVGLVSGSDYMKISEQMGERTSCPI 275
           T+TKPR++ +EE     LD +       ++ G D+ KI E +G +T+  I
Sbjct: 11  TITKPRERWSEEEHERFLDAL-------IMYGRDWKKIEEHVGTKTTIQI 53


>02_05_0893 + 32578890-32579003,32579325-32579554,32580147-32580768
          Length = 321

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +1

Query: 553 FVEALQSKFKDSGLKFALGGQISIDVFPIGWDKTYCLNHIASENFAEI 696
           +    + KFK+   +    G+   DV  I W+ T+ + H    N A++
Sbjct: 60  YANCREEKFKEFARRMLEAGEKGADVKGIDWESTFFVRHRPVSNLADL 107


>11_01_0665 -
           5413561-5413593,5413785-5413907,5414020-5414259,
           5414564-5415184
          Length = 338

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 251 GREDVVSNFNYVFSENGLVHHKNG-KKLSSESIVNHLGEQKLQEVINFAMGYMSNIKLPV 427
           GR  V+        + G++    G  K+ + SI  H G+Q   + I FA GY S +   +
Sbjct: 268 GRSAVIDVGTARLIKGGVIKVFQGISKIKTNSIEFHGGKQIPFDAIVFATGYKSTVNTWL 327

Query: 428 KRGNFI 445
           K+ + I
Sbjct: 328 KKNSII 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,040,023
Number of Sequences: 37544
Number of extensions: 391746
Number of successful extensions: 841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)