Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0782
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20514| Best HMM Match : No HMM Matches (HMM E-Value=.)             112   3e-25
SB_19259| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)                     29   3.1  
SB_40811| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_24992| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_20514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score =  112 bits (269), Expect = 3e-25
 Identities = 48/77 (62%), Positives = 58/77 (75%)
 Frame = +1

Query: 511 QFSEYDSKHKVRHQFVEALQSKFKDSGLKFALGGQISIDVFPIGWDKTYCLNHIASENFA 690
           +F EYD  H VR +FVEAL+ KF   GL++++GGQIS DVFP GWDKT+CL H+ +E F 
Sbjct: 147 EFFEYDKVHNVRGKFVEALKEKFPHLGLQYSIGGQISFDVFPKGWDKTFCLRHVEAEGFK 206

Query: 691 EIHFFGDKTDPGGNDHE 741
           EIHFFGDK   GGND E
Sbjct: 207 EIHFFGDKCYEGGNDWE 223



 Score =  109 bits (263), Expect = 2e-24
 Identities = 48/89 (53%), Positives = 65/89 (73%)
 Frame = +2

Query: 251 GREDVVSNFNYVFSENGLVHHKNGKKLSSESIVNHLGEQKLQEVINFAMGYMSNIKLPVK 430
           G EDV   ++Y F ENGLV +K+GK L+ ++I   LGE  +QE+I+F + YMSNIK+P K
Sbjct: 60  GGEDVTKLYDYFFPENGLVAYKDGKLLAIQNIKKFLGEDSIQELIDFCLSYMSNIKIPKK 119

Query: 431 RGNFIEFRSSMLNICPVGRSCNQIERISF 517
           RG FIEFR  ++N+ P+GR+C Q ERI F
Sbjct: 120 RGTFIEFRHGLINVSPIGRNCTQEERIEF 148



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 27/56 (48%), Positives = 37/56 (66%)
 Frame = +3

Query: 87  SQKKVLYLFDVDGTLTKPRQKITEEFRRFILDEVKSKVDVGLVSGSDYMKISEQMG 254
           + + +L LFDVDGT+T  R  I  E R  ++ E++ KV +GLV GSD  K+ EQMG
Sbjct: 6   NDRNILCLFDVDGTVTPSRLVIQPEMRE-LMAELRKKVKIGLVGGSDQCKVEEQMG 60


>SB_19259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -1

Query: 217 LTNPTSTFDFTSSRMNLLNSSVIFWRGFVNVPSTSNKYKTFF*LVIIVSKGETSLN 50
           LT    TF  T   +N++  +V++WR FVN       Y   F + II +    SLN
Sbjct: 305 LTPVAITFAITMLPLNMMRITVLYWRDFVN----QTYYPILFFVTIIFTAAYASLN 356


>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
          Length = 534

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +2

Query: 362 EQKLQEVINFAMGYMSNIKLPVKRGNFIEFRSSMLNICPV---GRSCNQIERISFLSMIQ 532
           +Q++QE  NF     + + L + RG    F+++  +  P+   G +  +++  ++L  I 
Sbjct: 135 QQQIQEKTNFVADNSARLGLNINRGKSKMFKTNASSETPITVQGEALEEVDTFTYLGSIL 194

Query: 533 NTKLGTN 553
           + + GT+
Sbjct: 195 DKQGGTD 201


>SB_40811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = +2

Query: 218 WFRLYEDFRTNGREDVVSNFNYVFSE--NGLVHHKNGKKLSSESIVNHLG-EQKLQEVIN 388
           W + Y DF T  R++  ++F  VF +  N  V  K  + L     V  +  E+KL ++++
Sbjct: 342 WLKQYIDFNTEKRKNAKNSFEKVFFKLMNNSVFEKTMENLRKRVGVRLVTVEKKLLKLVS 401

Query: 389 FAMGYMSNIKLPVK 430
                 ++++LP++
Sbjct: 402 KPSYEGTDVRLPLQ 415


>SB_24992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 611 PPRANFKPESLNLL*SASTNWCLTLCFES 525
           P +  F+ E++ +L    TN C  +CFES
Sbjct: 112 PSQGGFELEAMQILGKEITNICTIICFES 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,263,574
Number of Sequences: 59808
Number of extensions: 474303
Number of successful extensions: 903
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)