Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0782
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82268-3|CAB05198.2|  225|Caenorhabditis elegans Hypothetical pr...   113   1e-25
AL023828-26|CAA19455.2|  431|Caenorhabditis elegans Hypothetical...    31   0.68 
AL023828-12|CAA19456.1|  492|Caenorhabditis elegans Hypothetical...    31   0.68 
Z68222-7|CAA92504.2|  568|Caenorhabditis elegans Hypothetical pr...    31   0.90 
AF016670-6|AAB66103.2|  839|Caenorhabditis elegans Hypothetical ...    31   1.2  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   4.8  
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle...    28   8.4  
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so...    28   8.4  

>Z82268-3|CAB05198.2|  225|Caenorhabditis elegans Hypothetical
           protein F52B11.2 protein.
          Length = 225

 Score =  113 bits (272), Expect = 1e-25
 Identities = 48/77 (62%), Positives = 59/77 (76%)
 Frame = +1

Query: 511 QFSEYDSKHKVRHQFVEALQSKFKDSGLKFALGGQISIDVFPIGWDKTYCLNHIASENFA 690
           QF E+D KH +R +F E L+ KF   GL+FA+GGQIS+DVFP GWDKT+CL ++  + F 
Sbjct: 120 QFVEFDKKHGIRQKFTEQLREKFGQYGLQFAIGGQISVDVFPTGWDKTFCLQYLVPD-FD 178

Query: 691 EIHFFGDKTDPGGNDHE 741
            IHFFGDKT PGGNDHE
Sbjct: 179 TIHFFGDKTAPGGNDHE 195



 Score =  107 bits (257), Expect = 9e-24
 Identities = 48/99 (48%), Positives = 72/99 (72%)
 Frame = +2

Query: 224 RLYEDFRTNGREDVVSNFNYVFSENGLVHHKNGKKLSSESIVNHLGEQKLQEVINFAMGY 403
           ++ E    + ++ ++S F+Y FSENGL   K  +    +SI   +G+ KLQE+INFA+ Y
Sbjct: 24  KITEQLADHDKDLLLSLFDYTFSENGLYGFKGTEPYPVQSIQKAIGDAKLQELINFALRY 83

Query: 404 MSNIKLPVKRGNFIEFRSSMLNICPVGRSCNQIERISFL 520
           MS+I+LPVKRGNF+EFR+ M+N+ P+GRSC+Q ER+ F+
Sbjct: 84  MSDIQLPVKRGNFVEFRNGMINLSPIGRSCSQEERMQFV 122



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +3

Query: 165 RRFILDEVKSKVDVGLVSGSDYMKISEQMGE 257
           R F++ E + +V + +V GSD+ KI+EQ+ +
Sbjct: 2   REFLI-EARKRVPLAIVGGSDFKKITEQLAD 31


>AL023828-26|CAA19455.2|  431|Caenorhabditis elegans Hypothetical
           protein Y17G7B.10a protein.
          Length = 431

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
 Frame = +1

Query: 502 RANQFSEYDSKHKVRHQFVEALQSKFKDSGLKFAL-----GGQISID----VFPIGWDKT 654
           R + +    SKHK+ H ++  LQ + +++G++  L       Q ++D    VF  G D T
Sbjct: 67  RGSDYGRLLSKHKIHHSYLNTLQRELENAGIESRLVRRFGYTQEAVDWADAVFSAGGDGT 126

Query: 655 YCLNHIASENFAEIH--FFGDKTDPGGND 735
           + +   AS      H    G  TDP G++
Sbjct: 127 FLM---ASSRVRTKHKPVIGINTDPQGSE 152


>AL023828-12|CAA19456.1|  492|Caenorhabditis elegans Hypothetical
           protein Y17G7B.10b protein.
          Length = 492

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
 Frame = +1

Query: 502 RANQFSEYDSKHKVRHQFVEALQSKFKDSGLKFAL-----GGQISID----VFPIGWDKT 654
           R + +    SKHK+ H ++  LQ + +++G++  L       Q ++D    VF  G D T
Sbjct: 128 RGSDYGRLLSKHKIHHSYLNTLQRELENAGIESRLVRRFGYTQEAVDWADAVFSAGGDGT 187

Query: 655 YCLNHIASENFAEIH--FFGDKTDPGGND 735
           + +   AS      H    G  TDP G++
Sbjct: 188 FLM---ASSRVRTKHKPVIGINTDPQGSE 213


>Z68222-7|CAA92504.2|  568|Caenorhabditis elegans Hypothetical
           protein ZK1251.8 protein.
          Length = 568

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 320 GKKLSSESIVNHLGEQ---KLQEVINFAMGYMSNIKLPVKRGNFIEFR 454
           GKK++ +S+V HLG+Q     +E+ NF M    +  + V++G     R
Sbjct: 417 GKKMTMKSLVKHLGDQFNIPEEELANFDMSAFVDNAIKVEKGEIATLR 464


>AF016670-6|AAB66103.2|  839|Caenorhabditis elegans Hypothetical
           protein K02F6.3 protein.
          Length = 839

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
 Frame = +2

Query: 332 SSESIVNHLGEQKLQEVINFAMGYMSNIKLPVKRGNFIEFRSSMLNICPVGRSCNQ---- 499
           SS+  V+ +  +KLQ+ ++   G +  +     + NF EFR ++ N+  +  + NQ    
Sbjct: 379 SSQKDVSPVELEKLQKSVSEVGGCIDKLLETTMKVNFDEFRDTIRNLKQLDVAANQTKSL 438

Query: 500 IERISFLSMIQNTKLGTNLLKHFKASSKT 586
           I++I+ L++  + K+  +LL   K  + T
Sbjct: 439 IKKIADLNVYGDGKVFKSLLADIKKINAT 467


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 290 SENGLVHHKNGKKLSSESIVNHLGEQKLQEVINFA 394
           +E GLV  +N  KL  E++   + E +LQE++  A
Sbjct: 104 AELGLVTVRNNVKLMQEALKPDISESRLQEILQMA 138


>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine
           nucleotide exchange factorfor RAS protein.
          Length = 1413

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 425 VKRGNFIEFRSSMLNICPVGRSCNQIERISFLSMIQ 532
           VKR N I+         P+G++CN++E+   L MI+
Sbjct: 472 VKRLNEIQSSIDGFTGSPIGKTCNELEKDGDLGMIR 507


>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
           homolog protein 1 protein.
          Length = 1493

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 425 VKRGNFIEFRSSMLNICPVGRSCNQIERISFLSMIQ 532
           VKR N I+         P+G++CN++E+   L MI+
Sbjct: 472 VKRLNEIQSSIDGFTGSPIGKTCNELEKDGDLGMIR 507


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,782,369
Number of Sequences: 27780
Number of extensions: 376556
Number of successful extensions: 906
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)