Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0782
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45790.1 68415.m05695 eukaryotic phosphomannomutase family pr...   108   5e-24
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    30   1.5  
At3g09430.1 68416.m01120 hypothetical protein                          29   2.6  
At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to ...    29   4.5  
At4g27595.1 68417.m03964 protein transport protein-related low s...    29   4.5  
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim...    29   4.5  
At1g53470.1 68414.m06061 mechanosensitive ion channel domain-con...    29   4.5  
At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR...    28   5.9  
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ...    28   5.9  
At5g20660.1 68418.m02454 24 kDa vacuolar protein, putative simil...    28   7.8  
At2g23180.1 68415.m02769 cytochrome P450, putative                     28   7.8  
At1g65960.1 68414.m07484 glutamate decarboxylase 2 (GAD 2) simil...    28   7.8  
At1g09440.1 68414.m01056 protein kinase family protein contains ...    28   7.8  

>At2g45790.1 68415.m05695 eukaryotic phosphomannomutase family
           protein contains Pfam profile: PF03332 eukaryotic
           phosphomannomutase
          Length = 246

 Score =  108 bits (259), Expect = 5e-24
 Identities = 44/85 (51%), Positives = 67/85 (78%)
 Frame = +2

Query: 263 VVSNFNYVFSENGLVHHKNGKKLSSESIVNHLGEQKLQEVINFAMGYMSNIKLPVKRGNF 442
           V ++++Y FSENGLV HK+GK +  +S+  HLG+ KL+E+INF + Y++++ +P+KRG F
Sbjct: 61  VTNDYDYCFSENGLVAHKDGKSIGIQSLKLHLGDDKLKELINFTLHYIADLDIPIKRGTF 120

Query: 443 IEFRSSMLNICPVGRSCNQIERISF 517
           IEFR+ MLN+ P+GR+C+Q ER  F
Sbjct: 121 IEFRNGMLNVSPIGRNCSQEERDEF 145



 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 42/78 (53%), Positives = 55/78 (70%)
 Frame = +1

Query: 508 NQFSEYDSKHKVRHQFVEALQSKFKDSGLKFALGGQISIDVFPIGWDKTYCLNHIASENF 687
           ++F  YD    +R + V  L+ +F    L F++GGQIS DVFP GWDKTYCL ++  E+F
Sbjct: 143 DEFERYDKVQNIRPKMVAELRERFAHLNLTFSIGGQISFDVFPKGWDKTYCLQYL--EDF 200

Query: 688 AEIHFFGDKTDPGGNDHE 741
           +EIHFFGDKT  GGND+E
Sbjct: 201 SEIHFFGDKTYEGGNDYE 218



 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 29/53 (54%), Positives = 38/53 (71%)
 Frame = +3

Query: 99  VLYLFDVDGTLTKPRQKITEEFRRFILDEVKSKVDVGLVSGSDYMKISEQMGE 257
           V+ LFDVDGTLT PR++ T E   FI  E++  V +G+V GSD  KISEQ+G+
Sbjct: 8   VIALFDVDGTLTAPRKEATPELLDFI-RELRKVVTIGVVGGSDLSKISEQLGK 59


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 176 NEPPEFFCNFLARFCQRSVNIEQIQNFLLTSHNCLKR 66
           ++ P F  + L+R   R++++ Q Q F LTSH  L+R
Sbjct: 20  SDSPRFPISLLSRNLSRTLHVPQSQLFGLTSHKLLRR 56


>At3g09430.1 68416.m01120 hypothetical protein
          Length = 247

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
 Frame = +3

Query: 15  SYLSTGPKLPPKFKLVSPFETIMTSQKKVLYLFDVDGTLTKPRQKITEEFRRFILDEVKS 194
           SYLS G + P  F  VSP  + + +         + G+   P   + +E++   +  +  
Sbjct: 133 SYLSPGIRQPTPFAEVSPSASCVKNDPINEMRHSLSGSF--PSATLFKEYQNTAM-AILE 189

Query: 195 KVDVGLVSGSDYMKISEQMGERTSCP---ISTTYSVKMD 302
           K D  ++SG  Y+K S   GE  +C    +S T+ +  D
Sbjct: 190 KSDYTMISGKAYIKKS---GEDYACSLLIVSFTFKIGFD 225


>At5g11530.1 68418.m01345 embryonic flower 1 (EMF1) identical to
           embryonic flower 1 [Arabidopsis thaliana] GI:15430697
          Length = 1096

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = -3

Query: 647 SHPIGNTSILI*PPRANFKPESLNLL*SASTN 552
           SHPI  +S++  PP++ +KP SLN+  + STN
Sbjct: 770 SHPIWPSSMI--PPQSQYKPVSLNI--NQSTN 797


>At4g27595.1 68417.m03964 protein transport protein-related low
           similarity to SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 1212

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/60 (23%), Positives = 32/60 (53%)
 Frame = +3

Query: 81  MTSQKKVLYLFDVDGTLTKPRQKITEEFRRFILDEVKSKVDVGLVSGSDYMKISEQMGER 260
           ++  K +L+L +V+    K      +  R+ + +E+K   ++  V+ +D MK+ E + E+
Sbjct: 562 LSKVKNLLHLKEVEACAAKEEDAKMQTNRKELEEEIKDLQEIVEVAKADSMKLKESLVEK 621


>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative
           similar to DEIH-box RNA/DNA helicase [Arabidopsis
           thaliana] GI:5881579; contains Pfam profiles PF04408:
           Helicase associated domain (HA2), PF00271: Helicase
           conserved C-terminal domain
          Length = 1299

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 224 RLYEDFRTNGREDVVSNFNYVFSENGLVHHKNGKKLSSESIVNHLGEQK 370
           ++ EDFR +G E      N   +E G++ H+  +K+  +S  +  GEQ+
Sbjct: 27  KVIEDFRASGNEVYTFEHNLSNNERGVI-HQMCRKMGIQSKSSGRGEQR 74


>At1g53470.1 68414.m06061 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 881

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -1

Query: 310 MHQSIFTEYVVEIGHDVLSPICSEIFI*SEPLTNPTSTFDFTSSRMNLLNSSVI 149
           + +S+FT+YV+E    +  P   EI I  E + N   TF+    +++ L    +
Sbjct: 411 IQESLFTQYVIE---TLSGPPRIEIHIEEEKVANDVKTFEIVGRKLSPLGPKAV 461


>At5g17680.1 68418.m02072 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1294

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 206 YIHF*FYLVKNEPPEFFCNFLARFCQRSVNIEQIQNFLLTSHNCLK 69
           Y+ +  Y +K  P  FF  FL   C  + N+E++ + +    N  K
Sbjct: 584 YLRWDGYPLKTMPSRFFPEFLVELCMSNSNLEKLWDGIQPLRNLKK 629


>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
           DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
           [Arabidopsis thaliana]
          Length = 1576

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 212 GQWF-RLYEDFRTNGREDVVSNFNYVFSENGLVHHKNGKKLSSESIVNHLGEQK 370
           G W  ++ EDFR +G +  V       SE G++ H+  + +   S  N  GE++
Sbjct: 18  GAWATKVLEDFRASGNDSYVFEQQLTNSERGII-HQMCRTMGLRSKSNGSGEER 70


>At5g20660.1 68418.m02454 24 kDa vacuolar protein, putative similar
           to 24 kDa vacuolar protein VP24 [Ipomoea batatas]
           gi|5821406|dbj|BAA83809
          Length = 910

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 236 DFRTNGREDVVSNFNYVFSENGLVHH-KNGK-KLSSESIVNHLGEQKLQEVINFA 394
           DF+       +S  ++ F++N  V+H KN K +L     + HLGE  L  ++  A
Sbjct: 307 DFQVYKEVAGLSGLDFAFADNTAVYHTKNDKIELIKPGSLQHLGENMLAFLLRVA 361


>At2g23180.1 68415.m02769 cytochrome P450, putative
          Length = 516

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
 Frame = +3

Query: 108 LFDVDGTLTKPRQKITE------EFRRFILDEVKSKVDVGLVSGSDYMKISEQM 251
           +F+ D  L K  +K  +      +F+RF L  + SK++ GLV   DY+   +Q+
Sbjct: 117 IFNADSELWKDLRKSAQSMMTHQDFQRFTLRTIMSKLEKGLVPLLDYVAEKKQV 170


>At1g65960.1 68414.m07484 glutamate decarboxylase 2 (GAD 2) similar
           to glutamate decarboxylase (gad) GI:294111 from [Petunia
           hybrida]
          Length = 494

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 233 EDFRTNGREDVVSNFNYVFSENGLVHHKNGKKLSSESIVNHLGEQKLQEVI 385
           EDF     E +V++ + V  E   +  K  KK+  E I  ++ E+K+++ I
Sbjct: 422 EDFSRTLAERLVADISKVLHELDTLPSKISKKMGIEGIAENVKEKKMEKEI 472


>At1g09440.1 68414.m01056 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 466

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
 Frame = +2

Query: 212 GQWFRLYE-DFRTN--GREDVVSNFNYVFSENGLVHHKNGKKLSSESIVNHLGE-QKLQE 379
           G WF L + +  TN   +E+V+    Y     G +   NG  ++ + I+NHLG+ +K   
Sbjct: 142 GHWFTLRDLEIATNRFSKENVIGEGGYGVVYRGEL--VNGSLVAVKKILNHLGQAEKEFR 199

Query: 380 VINFAMGYMSNIKLPVKRGNFIEFRSSML 466
           V   A+G++ +  L    G  IE  + +L
Sbjct: 200 VEVDAIGHVRHKNLVRLLGYCIEGTNRIL 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,663,159
Number of Sequences: 28952
Number of extensions: 344007
Number of successful extensions: 802
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)