Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0781
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.5  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.5  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    27   2.5  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    27   3.3  
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch...    27   4.3  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    26   5.7  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    26   5.7  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   7.6  

>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 646 FIPITGNYCIYHNAYSYFHRLLIEL 572
           F+P      +YHN Y+YF + L +L
Sbjct: 81  FLPFILTLLLYHNFYNYFDQALADL 105


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 646 FIPITGNYCIYHNAYSYFHRLLIEL 572
           F+P      +YHN Y+YF + L +L
Sbjct: 81  FLPFILTLLLYHNFYNYFDQALADL 105


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 24/68 (35%), Positives = 33/68 (48%)
 Frame = +3

Query: 33  DEKYQQYLKHREDLENVFKNILGDDGVFLYPSHPTTAPYHNEPLVKAFNFSYTAIINSLG 212
           DE   +YLKH +          G D V L P  P+ AP     L +A  ++YT++ N L 
Sbjct: 416 DEYRNRYLKHLQ--------AYGVD-VLLTPVGPSPAP----KLGEAKYWTYTSVWNLLD 462

Query: 213 LPATTIPL 236
           LPA   P+
Sbjct: 463 LPAVVFPV 470


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 196 IAVYEKLKAFTNGSLWYGAVV 134
           + +YEKL+AF  G+L  G+VV
Sbjct: 101 VDIYEKLRAFKKGTLESGSVV 121


>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 213

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 33  DEKYQQYLKHREDLENVFKNILGDDGVFLYPSHPTTAPYHNEPLVKA 173
           D  Y++  KH   ++N + +++   G      HP  APY  E +++A
Sbjct: 4   DSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPY--EGIIRA 48


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 180 FSYTAIINSLGLPATTIPLGLGRDGYLLVCKLLQIITMTDYVSQL 314
           F+ + + N +GL + +      RD  LLVC    IIT++D +  L
Sbjct: 82  FNPSLVHNKMGLVSMSTATISSRDDKLLVCGSQFIITLSDNLEGL 126


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = -3

Query: 316 GNCET*SVIVMICNNLHTNRYPSLPKPKGIVVAGNPKLLIIAVYEKLKAFTNGSLWYGAV 137
           G+ +T + IV +  NL+  ++ SL     +V++   +L I      +K     S   G +
Sbjct: 86  GSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLI 145

Query: 136 VGCDGYKK 113
           +G + YK+
Sbjct: 146 IGGNNYKE 153


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 102 DDGVFLYPSHPTTAPYHNEPLVKAFNFSYTAIINSLGLPATTIPLGLGRDGY 257
           ++ + L        PY +     +  FS+T ++NSL L    +PL LG  G+
Sbjct: 428 EENISLTKDRQPKRPYFSLGSFISLIFSFTKVVNSLWLVLLVVPL-LGFVGF 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,462,458
Number of Sequences: 5004
Number of extensions: 72871
Number of successful extensions: 219
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)