Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0781
         (834 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16360| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   9e-14
SB_30331| Best HMM Match : Amidase (HMM E-Value=0)                     65   8e-11
SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23)              31   0.87 
SB_14030| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_56576| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                       29   6.1  

>SB_16360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 379

 Score = 74.5 bits (175), Expect = 9e-14
 Identities = 32/70 (45%), Positives = 45/70 (64%)
 Frame = +3

Query: 45  QQYLKHREDLENVFKNILGDDGVFLYPSHPTTAPYHNEPLVKAFNFSYTAIINSLGLPAT 224
           Q YL+  ++L    + ILG++GV ++PSHPT A  HN P+   FNF+YT I N L +P+T
Sbjct: 269 QAYLQMAQELRQELQRILGENGVLIFPSHPTLALRHNMPMFYPFNFAYTGIFNVLYMPST 328

Query: 225 TIPLGLGRDG 254
             P GL + G
Sbjct: 329 QCPAGLSKSG 338



 Score = 33.9 bits (74), Expect = 0.16
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 254 IPIGMQVIANHNNDRLCFAVAEELDRAFGGW 346
           +P+G+QV+A +  D L  AVA  ++   GGW
Sbjct: 339 LPMGVQVVAANGQDHLTLAVAMVIEELVGGW 369


>SB_30331| Best HMM Match : Amidase (HMM E-Value=0)
          Length = 555

 Score = 64.9 bits (151), Expect = 8e-11
 Identities = 27/56 (48%), Positives = 39/56 (69%)
 Frame = +3

Query: 87  KNILGDDGVFLYPSHPTTAPYHNEPLVKAFNFSYTAIINSLGLPATTIPLGLGRDG 254
           +++LGD+GV L+PSHP TA  H  P++   +F+YT+I N L +P T  PLGL  +G
Sbjct: 455 ESLLGDNGVLLFPSHPRTAMPHGMPVLSPLDFNYTSIFNVLRMPVTQCPLGLDSEG 510



 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 17/31 (54%), Positives = 23/31 (74%)
 Frame = +2

Query: 254 IPIGMQVIANHNNDRLCFAVAEELDRAFGGW 346
           +P+G+Q+ A  NNDRL  AVA  L++ FGGW
Sbjct: 511 MPLGIQIAAACNNDRLTLAVARALEQKFGGW 541


>SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23)
          Length = 977

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 195 IINSL-GLPATTIPLGLGRDGYLLVCKLLQIITMTDYVSQ 311
           I N++ GLP   IP  +   GY+ +C L+ I   ++Y +Q
Sbjct: 345 ICNTIQGLPILAIPYAVRNGGYVAICALMVIAIASNYTAQ 384


>SB_14030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 244 PKPKGIVVAGNPKLLIIAVYEKLKAFTNGSLWYGAVV 134
           PKP  +     PK++++A YE LK   N S W+  VV
Sbjct: 73  PKPDVLTDVVKPKIILVA-YESLKIKENLSWWFKIVV 108


>SB_56576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 684 NPVLVYDRRTQQSLSLL-PGTTAFITMRILIS 592
           NP L YD  T Q ++ L PG  ++IT RI++S
Sbjct: 127 NP-LTYDNLTPQQINALRPGLKSYITQRIVVS 157


>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = -2

Query: 452 RFIRRHPIAIKKIP---YLFINFRKHNANLKLKIFVALSNRRKLYLILR 315
           + +R+    IKKIP   Y+   +++++ N+KL +    SNR +L  +LR
Sbjct: 447 KLVRKALDMIKKIPKEDYMATFWKEYSTNIKLGVIEDHSNRTRLAKLLR 495


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,618,986
Number of Sequences: 59808
Number of extensions: 556217
Number of successful extensions: 1169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)