Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0781
         (834 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08980.1 68414.m01001 amidase family protein similar to compo...    33   0.18 
At3g56230.1 68416.m06249 speckle-type POZ protein-related contai...    31   1.2  
At3g25660.1 68416.m03194 glutamyl-tRNA(Gln) amidotransferase, pu...    31   1.2  
At4g36970.1 68417.m05239 remorin family protein contains Pfam do...    29   2.9  
At4g21200.1 68417.m03065 oxidoreductase, 2OG-Fe(II) oxygenase fa...    25   4.7  
At3g09340.1 68416.m01108 amino acid transporter family protein l...    29   5.0  
At3g09330.1 68416.m01107 amino acid transporter family protein b...    29   5.0  
At2g43580.1 68415.m05415 chitinase, putative similar to basic en...    29   5.0  
At3g54420.1 68416.m06019 class IV chitinase (CHIV) almost identi...    28   8.8  

>At1g08980.1 68414.m01001 amidase family protein similar to
           component of chloroplast outer membrane translocon Toc64
           [Pisum sativum] GI:7453538; contains Pfam profile
           PF01425: Amidase; supporting cDNA
           gi|11493701|gb|AF202077.1|AF202077
          Length = 425

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = +3

Query: 21  VKFGDEKYQQYLKHREDLENVFKNILGDDGVFLYPSHPTTAPY--HNEPLVKAFN---FS 185
           ++  DEK       + +L      +LG+ GV + P+ P   P+   N   +++F    FS
Sbjct: 316 IRTSDEKIDHCRSVKSELITALSTLLGEKGVLVIPTVPGPPPHLQANVAALESFRSRAFS 375

Query: 186 YTAIINSLGLPATTIPLGL 242
             +I    G    +IPLGL
Sbjct: 376 LLSIAGVSGFCQVSIPLGL 394


>At3g56230.1 68416.m06249 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain; similar to Speckle-type
           POZ protein (SP:O43791) [Homo sapiens]
          Length = 282

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +3

Query: 81  VFKNILGDDGVFLYPSHP-TTAPYHNEPLVKAFNFSYTAIINSLGLPATTIPLGLGRDGY 257
           +FKNIL  DG    P +  T    ++E L     F YT  + S  L      L +  D Y
Sbjct: 137 IFKNILDSDGCKTAPEYAITLQELNSEQLQALLEFLYTGTLASDKLEKNVYALFIAADKY 196

Query: 258 LL 263
           ++
Sbjct: 197 MI 198


>At3g25660.1 68416.m03194 glutamyl-tRNA(Gln) amidotransferase,
           putative similar to SP|O06491 Glutamyl-tRNA(Gln)
           amidotransferase subunit A (EC 6.3.5.-) {Bacillus
           subtilis}; contains Pfam profile PF01425: Amidase
          Length = 537

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
 Frame = +3

Query: 33  DEKYQQYLKHREDLENVFKNILGDDGVFLYPSHPTTA----PYHNEPLVKAFNFSYTAII 200
           D  Y++  + R  +   FK  L  + + + P+ P+ A       ++PL        T  +
Sbjct: 415 DAYYKRAQQVRTLIRKDFKAALEQNDILISPAAPSAAYKIGEKKDDPLAMYAGDIMTVNV 474

Query: 201 NSLGLPATTIPLGLGRDG 254
           N  GLPA  +P GL   G
Sbjct: 475 NLAGLPAMVLPCGLVEGG 492


>At4g36970.1 68417.m05239 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 427

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = -3

Query: 238 PKGIVVAGNPKLLIIAVYEKLKAFTNGSLWYGAVVGCDGYKKTP 107
           PKG++VAG+P      V E  + F  GS+  G   GCDGY + P
Sbjct: 145 PKGLMVAGSP--FSTGVLEADRVF-RGSVGGG---GCDGYGRGP 182


>At4g21200.1 68417.m03065 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to gibberellin 20-oxidase from A.
           thaliana [gi:1109699], Phaseolis vulgaris [gi:2262201];
           contains Pfam domain PF03171, 2OG-Fe(II) oxygenase
           superfamily
          Length = 293

 Score = 24.6 bits (51), Expect(2) = 4.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 229 IVVAGNPKLLIIAVYEKLKAFTNG 158
           I V  NPK LII + +  +A++NG
Sbjct: 196 IAVKPNPKALIINIGDLFQAWSNG 219



 Score = 22.6 bits (46), Expect(2) = 4.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 271 LHTNRYPSLPKPKGI 227
           L  NRYP  PKP  +
Sbjct: 150 LRMNRYPPCPKPSEV 164


>At3g09340.1 68416.m01108 amino acid transporter family protein low
           similarity to vesicular GABA transporter [Rattus
           norvegicus] GI:2587061; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 528

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 150 HNEPLVKAFNFSYTAIINSL-GLPATTIPLGLGRDGYLLVCKLLQIITMTDYVSQLPKN* 326
           + EP   +F  S    IN L G+   T+P  +   G+L +C LL    +T Y   L K  
Sbjct: 128 YGEPNFCSFPQSVLNGINVLCGISLLTMPYAVKEGGWLGLCILLSFAIITCYTGILLKRC 187

Query: 327 IELSA 341
           +E S+
Sbjct: 188 LESSS 192


>At3g09330.1 68416.m01107 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 524

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 150 HNEPLVKAFNFSYTAIINSL-GLPATTIPLGLGRDGYLLVCKLLQIITMTDYVSQLPKN* 326
           + EP   +F  S    IN L G+   T+P  +   G+L +C LL    +T Y   L K  
Sbjct: 128 YGEPNFCSFPQSVLNGINVLCGISLLTMPYAVKEGGWLGLCILLSFAIITCYTGILLKRC 187

Query: 327 IELSA 341
           +E S+
Sbjct: 188 LESSS 192


>At2g43580.1 68415.m05415 chitinase, putative similar to basic
           endochitinase CHB4 precursor SP:Q06209 from [Brassica
           napus]
          Length = 265

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 78  NVFKNILGDDGVFLYPSHPTTAPYHNEPLVKAFNFSYTAIINSLGL 215
           N    ++ D     YP  P  + +   PL+ ++NF+Y A   SLGL
Sbjct: 140 NGASRVMCDQNNRQYPCAPAKSYHGRGPLLLSWNFNYGACGQSLGL 185


>At3g54420.1 68416.m06019 class IV chitinase (CHIV) almost identical
           to class IV chitinase from GI:2597826 [Arabidopsis
           thaliana]
          Length = 273

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/62 (22%), Positives = 27/62 (43%)
 Frame = +3

Query: 66  EDLENVFKNILGDDGVFLYPSHPTTAPYHNEPLVKAFNFSYTAIINSLGLPATTIPLGLG 245
           E+++   K+   D+    YP +P    Y   P+  ++NF+Y     ++G      P  + 
Sbjct: 144 EEIDGASKDYC-DENATQYPCNPNKGYYGRGPIQLSWNFNYGPAGTAIGFDGLNAPETVA 202

Query: 246 RD 251
            D
Sbjct: 203 TD 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,724,255
Number of Sequences: 28952
Number of extensions: 368410
Number of successful extensions: 931
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)