Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0778
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    29   0.72 
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    29   0.95 
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    29   0.95 
SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1...    28   1.3  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    26   5.0  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   6.7  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   6.7  

>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 289 TKDSLKNIPREILHKIEPEYCGVCALELDSFGMSRLHYLSKNHAKNLRK 435
           T    +++ +EI++   P  C VC     S      H  SK H KNLRK
Sbjct: 253 TSSDDESLSKEIVNS-NPIMCMVCNKNFRSQNQLENHENSKKHKKNLRK 300


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -3

Query: 496 CQIVHLPLSD*IHHHSISTPIFSDSSHDF--LKGNANETFQKSPIQEHKHHSTQA 338
           CQ +++PL    HHH+I      + S D   L     ET+ +  I + +H+S  A
Sbjct: 449 CQELNIPLVLDWHHHNIVPGTLREGSLDLMPLIPTIRETWTRKGITQKQHYSESA 503


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 445 STPIFSDSSHDFLKGNANETFQKSPIQEHKHH 350
           S P + D+SHDF +    E   K+PI + K H
Sbjct: 289 SKPRWMDASHDFGREATPEILPKTPIPKRKPH 320


>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 95

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 143 SSEGVLVDDQTVQDLGRQTNIPHCNFQMHCC 51
           + EG LV D+   ++G+    P C F   CC
Sbjct: 64  TEEGFLVYDEEELNIGQGGGTPDCPFDCQCC 94


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +1

Query: 337 EPEYCGVCALELDSFGMSRLHYLSKNHAKNLRKWVSKSNDGGSNQKE 477
           E  YC VC        +   H  SK H K +++  S S    SN  E
Sbjct: 241 EAFYCEVCQKFFGKITVFEAHKKSKAHNKAVKRMQSSSPSTTSNTNE 287


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 384 SKRVQFKSTNTTVLRLYFVQYFSRNVFQTVLCKST 280
           +KR +FKS+    LR +  +   R+V+QT L  +T
Sbjct: 486 AKRKEFKSSVLYSLRCFTKRSHLRSVYQTTLLSNT 520


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 541 YVNIQGRQNIYETLHCQIVHLPLSD*IHHHSISTPIFSDSS 419
           Y   +  +++   ++ +I   P +  I+ H ISTP+F D S
Sbjct: 326 YSPCEAAKDLPNVMYREIELPPFTSRINWHDISTPVFIDHS 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,953
Number of Sequences: 5004
Number of extensions: 65788
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)