Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0778
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    29   3.6  
AF036706-6|AAK39275.2|  481|Caenorhabditis elegans Glutamyl(e)/g...    29   4.7  
U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z68014-5|CAA92027.1|  353|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 220  GWPCYAKT*QSGRVKRYLMRCGLTKDSLKNIPREILHKIEPE 345
            G  C A    S    R+L +C   ++SLKN   EIL   E E
Sbjct: 975  GGICNAMLRYSRANNRHLKKCNTEEESLKNYEEEILKNYEEE 1016


>AF036706-6|AAK39275.2|  481|Caenorhabditis elegans
           Glutamyl(e)/glutaminyl(q) trnasynthetase protein 3
           protein.
          Length = 481

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 364 LELDSFGMSRLHYLSKNHAKNLRK 435
           LE++ F    L YL+KNH  NL K
Sbjct: 417 LEIEVFNSESLEYLAKNHQLNLAK 440


>U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical
           protein C16A3.4 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 334 IEPEYCGVCALELDSFGMSRLHYLSKNHAKNLRK 435
           +EP YC  C   + S      H  SK H +N +K
Sbjct: 68  VEPLYCKACRKSIKSENAMTDHVASKKHKENEKK 101


>Z68014-5|CAA92027.1|  353|Caenorhabditis elegans Hypothetical
           protein W04G3.5 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 746 QRXQVNLSFNXLEILILKVMCKC*SNLC*NCIMPHNKQIKQCNMI 612
           Q    N++ + +E+L+L   CK   +     IMP+    KQC M+
Sbjct: 64  QSGSKNVNNDVMELLVLIYACKTSMSKTITVIMPYLPYSKQCRML 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,482,894
Number of Sequences: 27780
Number of extensions: 364197
Number of successful extensions: 895
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)