Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0778
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.3  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    24   1.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.3  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   2.3  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = -3

Query: 460 HHHSISTPIFSDSSHDFLKGNANETFQKSPIQEHKHHSTQAL 335
           HH S   P    S H    GN        P   H HH TQ+L
Sbjct: 321 HHPSQYHPHRGSSPHH-QHGNHTMGPTMGPPHHHHHHQTQSL 361


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 406 SKNHAKNLRKWVSKSNDGGSNQKEVNGQF 492
           +K   KNLRK  SK ND  + ++ ++GQF
Sbjct: 32  AKKTIKNLRKVCSKKND--TPKELLDGQF 58


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 41  NNEYSNAFGNYNGGYWSD 94
           NN Y+N + NYN   +++
Sbjct: 331 NNNYNNNYNNYNNNNYNN 348


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 409 KNHAKNLRKWVSKSNDGGSNQKEVNGQF 492
           K   KNLRK  SK ND  + ++ ++GQF
Sbjct: 7   KKTIKNLRKVCSKKND--TPKELLDGQF 32


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 41  NNEYSNAFGNYNGGY 85
           N  Y+N + NYN  Y
Sbjct: 91  NYNYNNNYNNYNNNY 105



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 41  NNEYSNAFGNYNGGY 85
           NN Y+N   NYN  Y
Sbjct: 95  NNNYNNYNNNYNTNY 109


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 144  SCLDQDQDQCLGLYPIKTHSEEDLVRMALLCE 239
            +C D D+++    Y   + ++ED V  +L  E
Sbjct: 1056 ACFDSDRERLYDCYVCYSPNDEDFVLHSLAVE 1087


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,680
Number of Sequences: 438
Number of extensions: 4508
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)