Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0778
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24450.1 68414.m03080 ribonuclease III family protein contain...    33   0.20 
At1g19030.1 68414.m02369 hypothetical protein                          29   2.5  
At1g14200.1 68414.m01680 zinc finger (C3HC4-type RING finger) fa...    29   2.5  
At3g15050.1 68416.m01904 calmodulin-binding family protein simil...    29   3.3  
At2g13680.1 68415.m01508 glycosyl transferase family 48 protein ...    28   7.7  
At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containi...    28   7.7  

>At1g24450.1 68414.m03080 ribonuclease III family protein contains
           similarity to Swiss-Prot:P51837 ribonuclease III (EC
           3.1.26.3) (RNase III) [Coxiella burnetii]
          Length = 191

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +3

Query: 42  ITNTAMHLEITMGDIGLTTKVLDRLIIHQDPLRTSC-LDQDQDQCLGLYP-IKTHSEEDL 215
           I  TA+ L+    DI +++K L RLI     + +SC LD D+   LGL   I+  ++ D 
Sbjct: 89  IIETAVSLQFLAKDIDISSKALGRLISEVSNVESSCALDGDR---LGLGKIIRVSTKTDA 145

Query: 216 VRMALLC 236
              A+LC
Sbjct: 146 SNSAILC 152


>At1g19030.1 68414.m02369 hypothetical protein
          Length = 398

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 199 WVLIG*RPKHWSWSWSKHEVRRGSWWMIKRSRT 101
           W ++  R   W     K+ +RRGS+W++K + T
Sbjct: 121 WRILSARRSLWVELVKKYLIRRGSFWLVKENTT 153


>At1g14200.1 68414.m01680 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 179

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +1

Query: 292 KDSLKNIPREILHKIEPEYCGVCALELDSFG----MSRLHYLSKNHAKNLRKWVSK 447
           K  ++N+PR ++ + + +Y G CA+ LD +      + +    K H+K + +W+ +
Sbjct: 87  KSEVENMPRVVIGEDKEKYGGSCAICLDEWSKGDVAAEMPCKHKFHSKCVEEWLGR 142


>At3g15050.1 68416.m01904 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 259

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 169 WSWSWSKHEVRRGSWWMIKRSRTLVVRPISP 77
           W WSW +  +    W +  R++  VV+PI P
Sbjct: 199 WGWSWKERWIAARPWEI--RAQCYVVKPIKP 227


>At2g13680.1 68415.m01508 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1923

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 521 STLYVHINFNFLN*TSLT*LVFNYLKVNSKLSYCIVLSAYYGALYSFS 664
           S L V +NF   +    T ++ N LK+   L++C+VL   Y    SF+
Sbjct: 534 SVLDVILNFPGFHRWKFTDVLRNILKIVVSLAWCVVLPLCYAQSVSFA 581


>At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1322

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 271 LMRCGLTKDSLK-NIPREILHKIEPEYCGVCALELDSFGMSRLHYLSKNHAKNL 429
           LM+C +   S +  IP + LH+  P++ G     +D  G++ +   + N + +L
Sbjct: 170 LMQCDINSPSDRPKIPSKCLHEASPDFSGEFDKAMDMEGLNIVSQNTSNRSNDL 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,444,576
Number of Sequences: 28952
Number of extensions: 335743
Number of successful extensions: 906
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)