Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0777
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    29   0.59 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   2.4  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   5.5  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   7.3  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   9.7  
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.7  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   9.7  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 209 AWV*RNTSFNFVWIIHFTIY 150
           +W    T+FN +W+IHFT Y
Sbjct: 478 SWFHLVTNFNRIWVIHFTTY 497


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 209 AWV*RNTSFNFVWIIHFTIYLCF*RFLIKTYLIVTVSYYQK 87
           +W    T+FN +W+IHF ++  F  F   T  + T  ++Q+
Sbjct: 508 SWFHLITNFNRIWVIHFGMFWYFTAFNSPT--LYTKPFHQR 546


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -1

Query: 334 HKLLALRNFSPMVTMAANHAIRQS*FWYDGYMLTSDLANSGKPGYSGTRLLISSG 170
           H+L+ L +F   VT     AI ++  ++DG  + S      K     T LL+S G
Sbjct: 235 HELIKLTHFPTYVTPMGKSAIDETSQFFDGVYVGSISDPEVKDRIESTDLLLSIG 289


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = -1

Query: 217  SGKPGYSGTRLLISSGLFILQFICVFNGFLSKHI 116
            S    ++   LL+++ L + +F+C+ N F  +H+
Sbjct: 929  SNHKSHNNQSLLLAASLTLSKFMCLSNNFCMEHL 962


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 332  MKELHSFEKLQANA-LDGVRVHREFSQGILSHVIPPRRYMQKLT 460
            +KE++    +  NA L+ V     FS+G+L  V+PP++  + ++
Sbjct: 1185 LKEMYQIITMGGNAELELVDSLDPFSEGVLFSVMPPKKSWKNIS 1228


>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 128

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 759 LIITHLVLSSTYWSYNL 709
           L    L+L STYWSY+L
Sbjct: 83  LFTVRLLLFSTYWSYSL 99


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 159 YNLFVFLTVSYQNISNSDC 103
           YN+  FL+V++QN    DC
Sbjct: 524 YNMLFFLSVNFQNPGLKDC 542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,413,417
Number of Sequences: 5004
Number of extensions: 75490
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)