Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0777
         (814 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical ...    31   1.3  
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ...    31   1.3  

>AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical
            protein Y79H2A.3b protein.
          Length = 1271

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = +2

Query: 248  IIPKLGLAYRVVCRHRYHWAKVAQRKQFMKELHSFEKLQANALDGVRVHREFSQGILSHV 427
            + PK  +A     R   H     Q+ +  +    FE L     D  +  R+F   IL  +
Sbjct: 968  VFPKRAIALESHVREMDHCIYWIQKYRQAQVRELFEHLANQTADKGKELRKFLSSILKEI 1027

Query: 428  IPPRRYMQKLTTDPLTPKER 487
             PP  Y  K+  DP+  +ER
Sbjct: 1028 HPPEDYCIKV-YDPIGEEER 1046


>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
            protein Y79H2A.3a protein.
          Length = 2129

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = +2

Query: 248  IIPKLGLAYRVVCRHRYHWAKVAQRKQFMKELHSFEKLQANALDGVRVHREFSQGILSHV 427
            + PK  +A     R   H     Q+ +  +    FE L     D  +  R+F   IL  +
Sbjct: 968  VFPKRAIALESHVREMDHCIYWIQKYRQAQVRELFEHLANQTADKGKELRKFLSSILKEI 1027

Query: 428  IPPRRYMQKLTTDPLTPKER 487
             PP  Y  K+  DP+  +ER
Sbjct: 1028 HPPEDYCIKV-YDPIGEEER 1046


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,723,730
Number of Sequences: 27780
Number of extensions: 418083
Number of successful extensions: 771
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)