Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0777
         (814 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45860.1 68416.m04963 receptor-like protein kinase, putative ...    35   0.074
At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal hydrolase-r...    31   0.69 
At4g23130.2 68417.m03334 receptor-like protein kinase 6 (RLK6) i...    31   1.2  
At4g23130.1 68417.m03333 receptor-like protein kinase 6 (RLK6) i...    31   1.2  
At3g05380.1 68416.m00588 myb family transcription factor contain...    29   3.7  
At4g23280.1 68417.m03355 protein kinase, putative similar to rec...    28   8.5  
At2g26710.1 68415.m03204 cytochrome P450, putative                     28   8.5  

>At3g45860.1 68416.m04963 receptor-like protein kinase, putative
           similar to receptor-like protein kinase 4 (gi:13506745),
           5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 676

 Score = 34.7 bits (76), Expect = 0.074
 Identities = 14/17 (82%), Positives = 17/17 (100%)
 Frame = +2

Query: 68  KSIDYFIFDSSLQSLLD 118
           KS+DYFIFDS++QSLLD
Sbjct: 430 KSLDYFIFDSTMQSLLD 446


>At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF04780:
           Protein of unknown function (DUF629), PF04781: Protein
           of unknown function (DUF627)
          Length = 1106

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
 Frame = +2

Query: 548 FLFEYCNLSFVA*TVKE------ITHKTSLHVNEKH-GRNHISQFP*SMCFLEC 688
           FL  +C+L  +  ++++      +TH  +L+V+E+    +H+   P S+CFLEC
Sbjct: 354 FLVMFCDLKILPCSIRDWMKRYSVTHLKNLNVSEQSLVDSHLVDTPQSICFLEC 407


>At4g23130.2 68417.m03334 receptor-like protein kinase 6 (RLK6)
           identical to receptor-like protein kinase 6 [Arabidopsis
           thaliana] GI:13506749; contains Pfam domain PF00069:
           Protein kinase domain
          Length = 663

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 68  KSIDYFIFDSSLQSLLD 118
           KS+DYF+FDS +QS LD
Sbjct: 423 KSLDYFLFDSRMQSQLD 439


>At4g23130.1 68417.m03333 receptor-like protein kinase 6 (RLK6)
           identical to receptor-like protein kinase 6 [Arabidopsis
           thaliana] GI:13506749; contains Pfam domain PF00069:
           Protein kinase domain
          Length = 659

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 68  KSIDYFIFDSSLQSLLD 118
           KS+DYF+FDS +QS LD
Sbjct: 419 KSLDYFLFDSRMQSQLD 435


>At3g05380.1 68416.m00588 myb family transcription factor contains
           Pfam profile:PF00249 Myb-like DNA-binding domain
          Length = 1055

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 178 KLKDVFRYTQASQS*QDRMSAYTHHTKIRIGVSRGLPPSL--PLG*SCATQAVYERTTQL 351
           +  + F + +  +  Q R S   H+T++R G   GLP  L  PL       A++ +T ++
Sbjct: 685 RFSERFLHEEREKLKQYRESVRKHYTELRTGAREGLPTDLARPLAVGNRVIAIHPKTREI 744

Query: 352 RE 357
            +
Sbjct: 745 HD 746


>At4g23280.1 68417.m03355 protein kinase, putative similar to
           receptor-like protein kinase 4 (gi:13506745), 5
           (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 656

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 68  KSIDYFIFDSSLQSLLD 118
           KS+DYF+FD ++Q  LD
Sbjct: 413 KSLDYFLFDPTMQGQLD 429


>At2g26710.1 68415.m03204 cytochrome P450, putative 
          Length = 520

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 723 WSYNLKVPIL-F*HSRKHIDYGNWLIWFRPCFSLTCSD 613
           +S+N+   +L F H  + I    +L+WF P F LT +D
Sbjct: 76  FSHNILPRVLSFYHHWRKIYGATFLVWFGPTFRLTVAD 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,278,774
Number of Sequences: 28952
Number of extensions: 376239
Number of successful extensions: 692
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)