Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0775
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0120 - 19932330-19932366,19932562-19932781,19932876-199329...    30   2.5  
01_06_0372 + 28828552-28829913                                         30   2.5  

>02_04_0120 -
           19932330-19932366,19932562-19932781,19932876-19932987,
           19933071-19933226,19933307-19933471,19933723-19934160,
           19934822-19935009,19935465-19935531,19936160-19936332,
           19937176-19937308,19937399-19937546,19937622-19937815,
           19938855-19939058,19939760-19939834
          Length = 769

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 258 RKIYTTNVLIIMMMFGVGREAQLASDTAEWSWCGAALCG 142
           +K Y+  +L+ ++ FGV     L ++ A  +W   ALCG
Sbjct: 378 QKGYSITILLAVVTFGVSTRWLLYTEQAPSAWLNFALCG 416


>01_06_0372 + 28828552-28829913
          Length = 453

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 213 GVGREAQLASDTAEWSWCGA-ALCGPSSGTPMYMTWCCGSSXFMPSADCT 67
           G+  EA   SD   W+ CGA A C P  G+P Y      S+ F+   D T
Sbjct: 104 GLSGEADTGSDLI-WTKCGACARCSP-RGSPSYYPTSSSSAAFVACGDRT 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,388,616
Number of Sequences: 37544
Number of extensions: 226733
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)