Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0774
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    29   0.61 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.80 
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    28   1.9  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   5.7  
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    26   7.5  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    26   7.5  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   9.9  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   9.9  

>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = +2

Query: 239 KSFIVTSVLALLAIVVTIIQSCVLMASRRTVGPNRSRHFCIYQIDIKINFSYLF*WLSVL 418
           KSF++ SVL L+A   TI    +L  +R  +    +R F I+ +     FSYL   L   
Sbjct: 296 KSFLIVSVLLLIAHFNTIFHPFILADNRHYLFYVFNRLFRIWWLKYLGPFSYLI--LYYF 353

Query: 419 FRVTSRYSMT 448
           F   S+  MT
Sbjct: 354 FLDISKLQMT 363


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -2

Query: 616  ELKKKNFMDVKNTIIKWIDVLKTF 545
            +LK +NF++ K T  KW+++L ++
Sbjct: 1256 QLKTENFLEYKVTFAKWVEILLSY 1279


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 646 NSMSRTTYYYELKKKNFMDVKNTIIKWIDVLKTFYIQ*HYRYSHE-NSHGTLIINYKC 476
           +++ R   YY    K  +D  ++   W D  +T+ +   Y  + E  ++G + +N KC
Sbjct: 399 DNIKRELSYYNDATKRKLDFMSSAPGWEDAYQTYQLLKEYESAFEAPAYGPIYMNLKC 456


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 445 HGVSRRYTKQHRKPSK*ITKINFNVDLIYTKMTRPIRSHGPT 320
           H  S+R  K H  PSK +TK + + D +  K  R      PT
Sbjct: 451 HIRSQRQHKTHAAPSKELTKESLSNDQLSVKEKRRHHKKAPT 492


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 685 CYNIKRQLSRHHTNSMSRTTYY 620
           C NI+R+L+ H  +S + T YY
Sbjct: 153 CSNIRRRLTAHIISSDASTAYY 174


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 302 CVLMASRRTVGPNRSRHFCIYQIDIKINF 388
           C+    ++    NRS+ FCI  +D KI +
Sbjct: 9   CLNRTQKKIKAKNRSQLFCIMILDFKIEY 37


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 583 NTIIKWIDVLKTFYIQ*HYRYSHENSHGTL 494
           NTI+ W D  K+ Y +   + +H N   TL
Sbjct: 544 NTIVGWADQRKSLYDEAVIKINHSNMLNTL 573


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 613 LKKKNFMDVKNTIIKWIDVLKTFYIQ 536
           LK+K F+  KN+I+K   +++ F ++
Sbjct: 832 LKRKEFIQTKNSILKVQSIIRGFLLR 857


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,905
Number of Sequences: 5004
Number of extensions: 60767
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)