Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0773
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   131   1e-31
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    87   2e-18
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    87   3e-18
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    62   7e-11
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   3.1  
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    27   4.1  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    27   4.1  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        26   5.4  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    26   5.4  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    26   7.2  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   9.5  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  131 bits (316), Expect = 1e-31
 Identities = 58/77 (75%), Positives = 66/77 (85%)
 Frame = +3

Query: 222 KYVPRXHPRRLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 401
           KYVPR     LEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VL
Sbjct: 58  KYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVL 117

Query: 402 DVVRKEAESCDCLQGFQ 452
           DVVR+EAE+CD LQGFQ
Sbjct: 118 DVVRREAEACDALQGFQ 134



 Score =  117 bits (282), Expect = 2e-27
 Identities = 53/72 (73%), Positives = 62/72 (86%)
 Frame = +2

Query: 509 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 688
           KIREEYPDR+M T+SV P+PK SDTVVEPYNATLS+HQLVEN+DET+CIDNEAL  I   
Sbjct: 154 KIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFAN 213

Query: 689 TLKLSTPTYGDL 724
           TLK+ +P+Y DL
Sbjct: 214 TLKIKSPSYDDL 225



 Score =  100 bits (239), Expect = 3e-22
 Identities = 41/58 (70%), Positives = 49/58 (84%)
 Frame = +2

Query: 50  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQ 223
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA+GG+
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGK 58


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 38/76 (50%), Positives = 51/76 (67%)
 Frame = +3

Query: 222 KYVPRXHPRRLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 401
           KYVPR     LEP  +D VR+GP+  +F P+  + G+  A NN+A+GHYT G ELVD V 
Sbjct: 60  KYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVT 119

Query: 402 DVVRKEAESCDCLQGF 449
           D +R+ A++C  LQGF
Sbjct: 120 DKIRRIADNCSGLQGF 135



 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 30/72 (41%), Positives = 47/72 (65%)
 Frame = +2

Query: 509 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 688
           ++  EY  +    +SV P+P+VS +VVEPYN+ L+ H  ++  D T+ +DNE+ YDIC R
Sbjct: 156 RLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRR 215

Query: 689 TLKLSTPTYGDL 724
            L +  P+Y +L
Sbjct: 216 NLDIERPSYENL 227



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 19/34 (55%), Positives = 21/34 (61%)
 Frame = +2

Query: 50  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTG 151
           MREI+ I  GQ G QIG   WE+   EHGI P G
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 87.0 bits (206), Expect = 3e-18
 Identities = 37/76 (48%), Positives = 53/76 (69%)
 Frame = +3

Query: 222 KYVPRXHPRRLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 401
           K+VPR     LEP  +D VR+GP+  +F P+  V G+  A NN+A+GHYT G E++DSVL
Sbjct: 64  KFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVL 123

Query: 402 DVVRKEAESCDCLQGF 449
           + +R+ A++C  LQGF
Sbjct: 124 ERIRRMADNCSGLQGF 139



 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 33/72 (45%), Positives = 49/72 (68%)
 Frame = +2

Query: 509 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 688
           ++  EY  +    +SV P+P+VS +VVEPYN+ L+ H  ++N+D T+ +DNEA YDIC R
Sbjct: 160 RLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRR 219

Query: 689 TLKLSTPTYGDL 724
            L +  PTY +L
Sbjct: 220 NLDIERPTYENL 231



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 22/56 (39%), Positives = 31/56 (55%)
 Frame = +2

Query: 50  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASG 217
           MRE++ +  GQ G QIG   WE+   EHGI P G    +S  ++ + N Y N+  G
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENS--EVHKNNSYLNDGFG 54


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 62.5 bits (145), Expect = 7e-11
 Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
 Frame = +3

Query: 222 KYVPRXHPRRLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDS 395
           +Y+PR     LEP  ++++ S  +G ++ P+N +  ++  GAGNNWA G Y+    + + 
Sbjct: 59  RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFED 117

Query: 396 VLDVVRKEAESCDCLQGF 449
           ++D++ +EA+  D L+GF
Sbjct: 118 IMDMIDREADGSDSLEGF 135



 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +2

Query: 509 KIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICF 685
           ++ + YP +I+ TYSV P S  VSD VV+PYN+ L++ +L  N D    +DN AL  I  
Sbjct: 156 RLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAA 215

Query: 686 RTLKLSTPTY 715
             L    PT+
Sbjct: 216 DRLHTQNPTF 225



 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 23/53 (43%), Positives = 37/53 (69%)
 Frame = +2

Query: 53  REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 211
           REI+ +QAGQCGNQIG++FW+ +  EHGI P G     +   ++R +V++ ++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS 55


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +2

Query: 89  NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 190
           N++G    E+++++  +DPT A   + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +2

Query: 449 PTDTLARRRHRFRYGHPPHLKIREEYPDRIMNTYSVVP---SPKVSDTVVEPY 598
           P    +R RH   Y   PHL++R+   D+ +  +       SP + D +++ Y
Sbjct: 63  PKSDDSRERHGSNYVIEPHLELRDMAKDKTLENFLAQMDDYSPLIPDVLLDYY 115


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 285 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 386
           GP+G +F P  F+F  +G    NW+   Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 354 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 443
           A+GH   G ELV +  D +RK++E+   L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 427 DSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSGRKICPK 290
           ++A+ RTTS T+    +PS       L P P    +  S R+ CPK
Sbjct: 390 NAAADRTTSPTQGQPESPS---KSILLRPPPSIASSPESKRRKCPK 432


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 306  RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDC 437
            RP   +F     G++   G   +  E  D ++ +  +  ESCDC
Sbjct: 955  RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -2

Query: 392 IDELSTLRVVSLGPVVAGAGLSEDEVVRTEDLSERSRADRVHGAGLKSTRMXAGHV 225
           ++++S   V+ +G    G G++ D   R  ++    + D       KST+M  G V
Sbjct: 62  VEDISKFDVLIIGGGATGTGVAVDASTRGLNVCLLEKTDFASETSSKSTKMAHGGV 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,208,343
Number of Sequences: 5004
Number of extensions: 64423
Number of successful extensions: 201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)